Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAGA51_RS04360 Genome accession   NZ_CP151842
Coordinates   960601..962001 (+) Length   466 a.a.
NCBI ID   WP_042486207.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 955601..967001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS04345 fbpC 956446..957501 (+) 1056 WP_042486211.1 ferric ABC transporter ATP-binding protein -
  AAGA51_RS04355 uvrB 958300..960330 (+) 2031 WP_042486208.1 excinuclease ABC subunit UvrB -
  AAGA51_RS04360 luxO 960601..962001 (+) 1401 WP_042486207.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAGA51_RS04365 luxU 962001..962357 (+) 357 WP_081878715.1 quorum-sensing phosphorelay protein LuxU -
  AAGA51_RS04370 yvcK 962449..963339 (-) 891 WP_042486268.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  AAGA51_RS04375 moaA 963728..964717 (+) 990 WP_042486200.1 GTP 3',8-cyclase MoaA -
  AAGA51_RS04380 moaB 964795..965301 (+) 507 WP_042486196.1 molybdenum cofactor biosynthesis protein B -
  AAGA51_RS04385 moaC 965314..965793 (+) 480 WP_042486194.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAGA51_RS04390 moaD 965790..966035 (+) 246 WP_042486192.1 molybdopterin synthase sulfur carrier subunit -
  AAGA51_RS04395 moaE 966037..966492 (+) 456 WP_042486189.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52077.68 Da        Isoelectric Point: 5.5633

>NTDB_id=981084 AAGA51_RS04360 WP_042486207.1 960601..962001(+) (luxO) [Vibrio diazotrophicus strain ATCC 33466]
MQHNYTPQKAKYLLMVEDTVSVAALYRSYLTPLEIDINIVGTGREAIESIAAREPDLILLDLRLPDMTGMDVLHAVKQKS
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDADGLNNQNYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAADRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RSDDVIEIAYSLLGYMSKEEGKGFVRLSPEVVERFKRYEWPGNVRQLQNVLRNVVVLNEGKEITQEMLPPPLNLPQERVE
PVDMPMSGPITVHEIFPLWMTEKQAIEKAIEACDGNIPKAAGYLDVSPSTLYRKLQTWNEKEKESR

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=981084 AAGA51_RS04360 WP_042486207.1 960601..962001(+) (luxO) [Vibrio diazotrophicus strain ATCC 33466]
ATGCAACATAATTACACACCACAAAAAGCAAAATACTTATTGATGGTGGAAGATACTGTGTCCGTGGCGGCACTGTATCG
TTCATATCTCACTCCACTTGAAATAGATATCAACATAGTAGGGACGGGGCGCGAAGCAATAGAAAGCATCGCCGCACGCG
AACCTGATTTAATTCTTCTCGACCTTCGATTACCAGATATGACAGGGATGGACGTTTTGCATGCCGTAAAACAGAAATCA
CCTGATGTCCCAGTTATTTTCATGACTGCGCATGGTTCGATTGATACTGCGGTTGAAGCCATGCGCCACGGGGCTCAGGA
CTTCTTGATTAAGCCTTGTGAAGCGGATCGACTGCGTGTCACCGTTAACAACGCTATTCGCAAAGCCAGTAAGCTAAAAA
ATGACGCTGATGGTCTGAATAATCAGAATTATCAGGGCTTTATAGGAAGTAGTCAGACGATGCAGGCGGTTTATCGCACC
ATAGACTCGGCCGCGACCAGTAAAGCGAGCATTTTTATTACCGGAGAAAGTGGTACTGGTAAGGAAGTGTGTGCAGAGGC
GATTCATGCGGCGAGTAAACGCGGTGACAAACCGTTTATCGCTATTAACTGTGCTGCGATTCCTAAAGATTTGATTGAAA
GTGAGTTGTTTGGTCACGTGAAAGGTGCCTTTACAGGTGCAGCGGCTGACCGACAAGGCGCAGCCGAATTAGCAGACGGT
GGCACACTTTTTCTCGATGAGTTGTGCGAGATGGATCTAGAATTGCAAACAAAACTGCTGCGCTTTATTCAGACGGGCAC
ATTTCAAAAAGTCGGCTCTTCTAAGATGAAAAGCGTGGATGTACGATTCGTTTGTGCAACCAACCGTGATCCATGGAAAG
AAGTGCAGGAAGGGCGTTTTAGGGAAGACTTATATTACCGTCTCTATGTTATACCATTGCATCTGCCGCCTTTGCGTGAA
CGCAGCGATGACGTCATCGAAATCGCTTATTCGCTGTTGGGTTATATGTCTAAAGAAGAAGGCAAAGGTTTTGTTCGCTT
GTCTCCTGAAGTGGTAGAGCGCTTTAAGCGCTATGAGTGGCCGGGTAACGTTCGTCAGTTACAGAACGTATTGCGTAATG
TAGTGGTTCTTAATGAGGGTAAAGAGATCACTCAAGAGATGTTGCCTCCACCGTTGAACTTACCTCAGGAACGTGTTGAA
CCCGTTGACATGCCGATGAGCGGCCCTATCACTGTGCATGAAATATTTCCTCTTTGGATGACAGAAAAACAGGCGATCGA
AAAAGCGATAGAAGCTTGCGATGGCAACATTCCAAAAGCGGCGGGCTATTTGGATGTCAGCCCTTCAACGCTCTACAGAA
AACTACAAACGTGGAATGAGAAAGAGAAGGAAAGTCGATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.839

96.137

0.854

Multiple sequence alignment