Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AAGA51_RS01020 Genome accession   NZ_CP151842
Coordinates   229199..230206 (+) Length   335 a.a.
NCBI ID   WP_042484975.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 224199..235206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS01000 metJ 224303..224620 (+) 318 WP_042484962.1 met regulon transcriptional regulator MetJ -
  AAGA51_RS01005 - 224753..226030 (-) 1278 WP_042484965.1 malic enzyme-like NAD(P)-binding protein -
  AAGA51_RS01010 rpmE 226222..226440 (-) 219 WP_042484967.1 50S ribosomal protein L31 -
  AAGA51_RS01015 priA 226687..228888 (+) 2202 WP_042484972.1 primosomal protein N' -
  AAGA51_RS01020 cytR 229199..230206 (+) 1008 WP_042484975.1 DNA-binding transcriptional regulator CytR Regulator
  AAGA51_RS01025 ftsN 230319..230861 (+) 543 WP_042484977.1 cell division protein FtsN -
  AAGA51_RS01030 hslV 231030..231584 (+) 555 WP_042484980.1 ATP-dependent protease subunit HslV -
  AAGA51_RS01035 hslU 231616..232947 (+) 1332 WP_042484984.1 HslU--HslV peptidase ATPase subunit -
  AAGA51_RS01040 - 233089..234006 (+) 918 WP_042485422.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AAGA51_RS01045 rraA 234082..234609 (+) 528 WP_042484987.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37069.50 Da        Isoelectric Point: 6.4969

>NTDB_id=981071 AAGA51_RS01020 WP_042484975.1 229199..230206(+) (cytR) [Vibrio diazotrophicus strain ATCC 33466]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPESATLCQFRHQGYQQALRRAGITMNPTYTTYGDFTFESGVKAVRQLLSLPDAPTA
IFCHNDTMAIGAMQEAKRLGLRIPRDLSVVGFDDIQFSQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVQAGSRLLE
THLIVRESAAPPRSH

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=981071 AAGA51_RS01020 WP_042484975.1 229199..230206(+) (cytR) [Vibrio diazotrophicus strain ATCC 33466]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGCGTATCGACCGCGACGGTGTCGCGAGCTCTGATGAATCCTGAGAA
AGTATCGTCTTCGACTCGCAAACGCGTAGAAGAAGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCGAGAAATC
TGCGTCGAAATGAGTCGAAAACGATCGTAGCGATTGTCCCGGATATTTGTGATCCTTATTTCACAGAAATTATTCGTGGT
ATTGAAGATGCGGCAATGGAGCACGGATATCTTGTTTTGCTGGGGGATAGTGGTCAGCAAAAGAAACGTGAAAGCTCATT
TGTTAATCTAGTTTTCACCAAACAAGCGGACGGAATGCTGTTACTAGGTACAGATTTACCATTTGATGTGAGTAAGCCTG
AACAGAAAAATCTTCCACCAATGGTGATGGCTTGTGAATTTGCTCCGGAACTGGAGTTACCAACGGTTCACATTGATAAC
CTAACCTCTGCATTTGAAGCTGTAAATTATTTAACTCAGCTTGGACATAAGCGAATTGCTCAAATCTCTGGTCCAGAAAG
TGCGACACTTTGCCAATTCCGTCATCAAGGTTACCAACAAGCACTGCGTAGAGCGGGTATCACTATGAATCCGACTTATA
CAACTTATGGTGATTTCACTTTTGAGTCAGGGGTGAAGGCTGTACGTCAGTTACTTTCATTACCAGACGCTCCAACTGCC
ATCTTCTGTCACAACGACACTATGGCAATTGGTGCCATGCAAGAAGCTAAGCGCTTAGGTTTGCGTATTCCTCGTGACCT
TTCTGTGGTCGGATTCGATGACATCCAGTTCTCACAATACTGTGATCCACCGTTGACTACGATTTCTCAGCCTCGCTATG
AGATTGGTCGTCAAGCTATGTTGATGATGTTGGAACTGTTGCGTGGTCATGACGTGCAAGCGGGTTCTCGCCTATTAGAA
ACCCATTTGATTGTGCGTGAGAGTGCTGCACCTCCTCGTTCTCACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.976

99.104

0.931
  cytR Vibrio parahaemolyticus RIMD 2210633

88.889

99.403

0.884

Multiple sequence alignment