Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAFN71_RS06900 Genome accession   NZ_CP151840
Coordinates   1660409..1661767 (-) Length   452 a.a.
NCBI ID   WP_074937446.1    Uniprot ID   -
Organism   Algibacter lectus strain AS40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1655409..1666767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFN71_RS06895 (AAFN71_06880) - 1659812..1659967 (-) 156 WP_159140059.1 hypothetical protein -
  AAFN71_RS06900 (AAFN71_06885) radA 1660409..1661767 (-) 1359 WP_074937446.1 DNA repair protein RadA Machinery gene
  AAFN71_RS06905 (AAFN71_06890) - 1661804..1662955 (-) 1152 WP_304405104.1 alpha/beta hydrolase -
  AAFN71_RS06910 (AAFN71_06895) - 1663050..1664030 (-) 981 WP_304405102.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  AAFN71_RS06915 (AAFN71_06900) panD 1664036..1664386 (-) 351 WP_042499542.1 aspartate 1-decarboxylase -
  AAFN71_RS06920 (AAFN71_06905) panC 1664400..1665251 (-) 852 WP_304405099.1 pantoate--beta-alanine ligase -
  AAFN71_RS06925 (AAFN71_06910) - 1665414..1666223 (+) 810 WP_042499589.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49879.23 Da        Isoelectric Point: 6.9361

>NTDB_id=981051 AAFN71_RS06900 WP_074937446.1 1660409..1661767(-) (radA) [Algibacter lectus strain AS40]
MAKVKTTFFCQNCGTQYAKWQGQCNACKNWNTIVEEVIQKPEKSDWKTPSNSAKRVSKPLRLKEIDSSKEARLDTSDAEF
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERINPNNESCYILTETKTQNIFKQI
EALEPDIVIIDSIQTLHSDYIESSSGSISQVKECTTELIKFAKETNTPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAQKNRFGSTHELGIYEMLGSGLREVSNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDEALPANYCFAAEVGLSGEI
RPVQRVEQRILEAEKLGFSTIFVSKYNKISLRDTNIKIQLISKIEDLVSSLT

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=981051 AAFN71_RS06900 WP_074937446.1 1660409..1661767(-) (radA) [Algibacter lectus strain AS40]
ATGGCCAAAGTAAAAACCACTTTTTTTTGCCAAAACTGTGGCACGCAATATGCCAAATGGCAAGGGCAATGTAATGCTTG
TAAAAATTGGAACACTATAGTTGAAGAGGTGATACAAAAACCAGAAAAAAGCGATTGGAAAACCCCAAGCAATAGTGCCA
AACGAGTTTCTAAACCTCTACGATTAAAAGAAATTGACTCATCGAAAGAAGCTCGCTTAGACACTTCAGATGCTGAATTT
AATCGCGTTTTAGGAGGCGGCATTGTCCCTGGCTCTTTAACACTTTTAGGAGGAGAACCCGGTATTGGCAAAAGCACATT
GCTTCTTCAAATATCACTAAAACTACCATACAGAACACTATATGTTTCTGGTGAAGAAAGCCAAAAACAAATAAAAATGC
GTGCTGAACGCATTAACCCAAATAACGAGAGCTGTTACATTCTAACAGAAACCAAAACGCAAAATATTTTTAAGCAAATT
GAAGCCTTAGAACCAGACATCGTTATTATTGATTCGATACAAACGCTACATTCCGATTATATAGAATCATCAAGCGGAAG
TATCTCTCAAGTAAAAGAATGCACAACCGAACTTATTAAATTCGCAAAAGAAACAAATACACCAGTTATTTTAATTGGAC
ACATTACTAAAGATGGGAATATTGCAGGACCAAAAATACTAGAGCACATGGTAGATACCGTGCTACAATTTGAAGGCGAC
CGCAACCATGTGTTTAGAATTTTACGTGCACAAAAAAACCGTTTTGGCTCAACCCACGAACTTGGTATTTATGAAATGTT
AGGCTCAGGATTAAGAGAAGTCTCTAACCCTAGCGAAATTTTAATTTCAAAAAAAGACGAAGAACTTTCGGGCAATGCCA
TTGCCGCAACCTTAGAAGGCATGCGCCCTTTAATGATAGAAGTTCAAGCCTTAGTTAGCACAGCTGTATATGGCACACCA
CAACGTAGTGCCACTGGTTTTAATGCTAAACGTCTAAACATGTTATTAGCTGTTTTAGAAAAACGCGCAGGATTCAGACT
AGGTGCAAAAGATGTCTTTTTAAATATTACAGGAGGCATAAATGTTGATGATCCCGCTATAGATTTAGCTGTTGTTGCCG
CTATTTTATCTTCAAATGAAGATGAAGCTTTGCCTGCTAATTATTGTTTTGCTGCAGAGGTTGGATTATCTGGAGAAATT
CGTCCTGTTCAACGTGTAGAACAACGTATTCTAGAAGCTGAAAAACTTGGGTTTTCAACCATTTTTGTATCTAAATACAA
TAAGATTTCATTGAGAGACACTAACATTAAAATTCAATTAATTTCTAAAATTGAAGATTTGGTTTCAAGCTTAACCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.163

95.133

0.487
  radA Streptococcus mitis SK321

49.661

98.009

0.487
  radA Streptococcus pneumoniae Rx1

50.585

94.469

0.478
  radA Streptococcus pneumoniae D39

50.585

94.469

0.478
  radA Streptococcus pneumoniae R6

50.585

94.469

0.478
  radA Streptococcus pneumoniae TIGR4

50.585

94.469

0.478
  radA Streptococcus mitis NCTC 12261

50.585

94.469

0.478

Multiple sequence alignment