Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABXG87_RS05780 Genome accession   NZ_AP031488
Coordinates   1251244..1253445 (-) Length   733 a.a.
NCBI ID   WP_070849173.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246244..1258445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS05755 (Ssa13956_10760) - 1247186..1247947 (-) 762 WP_353551201.1 hypothetical protein -
  ABXG87_RS05760 (Ssa13956_10770) nth 1248075..1248719 (-) 645 WP_353551202.1 endonuclease III -
  ABXG87_RS05765 (Ssa13956_10780) - 1248719..1249417 (-) 699 WP_014634316.1 DnaD domain-containing protein -
  ABXG87_RS05770 (Ssa13956_10790) metA 1249490..1250434 (-) 945 WP_004182659.1 homoserine O-succinyltransferase -
  ABXG87_RS05775 (Ssa13956_10800) - 1250607..1251125 (-) 519 WP_353551205.1 adenine phosphoribosyltransferase -
  ABXG87_RS05780 (Ssa13956_10810) recJ 1251244..1253445 (-) 2202 WP_070849173.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABXG87_RS05785 (Ssa13956_10820) - 1253756..1254160 (-) 405 WP_070849170.1 GNAT family N-acetyltransferase -
  ABXG87_RS05790 (Ssa13956_10830) - 1254371..1255138 (-) 768 WP_045772091.1 SDR family oxidoreductase -
  ABXG87_RS05795 (Ssa13956_10840) rnz 1255138..1256067 (-) 930 WP_045772092.1 ribonuclease Z -
  ABXG87_RS05800 (Ssa13956_10850) - 1256099..1256740 (-) 642 WP_045001806.1 cystathionine beta-lyase -
  ABXG87_RS05805 (Ssa13956_10860) hflX 1256733..1257971 (-) 1239 WP_070849213.1 GTPase HflX -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82181.41 Da        Isoelectric Point: 4.3265

>NTDB_id=98101 ABXG87_RS05780 WP_070849173.1 1251244..1253445(-) (recJ) [Streptococcus salivarius strain NBRC 13956]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSYLHDPYLLHDMDKAVARIRRAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNEIDTSAKNTLNLDEELQLSELGLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGLPTVEEAADTEPAVVLSTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQNLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=98101 ABXG87_RS05780 WP_070849173.1 1251244..1253445(-) (recJ) [Streptococcus salivarius strain NBRC 13956]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTAAAGGCTG
ATCTATCATACCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCGGTTGCTAGAATTCGTCGGGCCATTGAAAAT
TATGAACAAATCTTAGTCTATGGGGACTATGATGCAGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGTGCCGAGGCTCGAGTCTATTTGCCCAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTTATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTTTGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCTACAACGATTTCCGAAGAAACGGTAGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGGTTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTTTTAGGTATTGTAGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGTTCAGCCCGTAGTTTGGAATCAATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACACGCTGGAGCCGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGAGATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTGGCTTGGATACTATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTCCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATGGCACTGCCTGAAGGTCTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAGTACCCTACCTGAATCAGCTACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAAG
CTATCTATTTTAAAAATAGTATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTACCAATTCCCAGAATTCGATGTTCGCTATAAATTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTTCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAAATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
CTGGGAACTCCACAGGAAATTTATGATTGGCTGTATAAGTAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.799

100

0.681
  recJ Bacillus subtilis subsp. subtilis str. 168

38.059

100

0.407

Multiple sequence alignment