Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABXG87_RS05725 Genome accession   NZ_AP031488
Coordinates   1241662..1243332 (-) Length   556 a.a.
NCBI ID   WP_004182651.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1236662..1248332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS05690 (Ssa13956_10630) - 1236698..1237390 (-) 693 WP_004182646.1 phosphoglycerate mutase -
  ABXG87_RS05695 (Ssa13956_10640) - 1237647..1238582 (+) 936 WP_004182647.1 dihydroorotate oxidase -
  ABXG87_RS05700 (Ssa13956_10650) - 1238644..1238844 (-) 201 WP_002883994.1 hypothetical protein -
  ABXG87_RS05705 (Ssa13956_10660) - 1238905..1239180 (-) 276 WP_002884048.1 HU family DNA-binding protein -
  ABXG87_RS05710 (Ssa13956_10670) - 1239317..1239889 (-) 573 WP_353551198.1 YpmS family protein -
  ABXG87_RS05715 (Ssa13956_10680) - 1239882..1240757 (-) 876 WP_004182649.1 SGNH/GDSL hydrolase family protein -
  ABXG87_RS05720 (Ssa13956_10690) - 1240750..1241592 (-) 843 WP_045768844.1 DegV family protein -
  ABXG87_RS05725 (Ssa13956_10700) recN 1241662..1243332 (-) 1671 WP_004182651.1 DNA repair protein RecN Machinery gene
  ABXG87_RS05730 (Ssa13956_10710) - 1243341..1243787 (-) 447 WP_004182652.1 ArgR family transcriptional regulator -
  ABXG87_RS05735 (Ssa13956_10720) - 1243774..1244601 (-) 828 WP_349204534.1 TlyA family RNA methyltransferase -
  ABXG87_RS05740 (Ssa13956_10730) - 1244594..1245466 (-) 873 WP_045768845.1 polyprenyl synthetase family protein -
  ABXG87_RS05745 (Ssa13956_10740) - 1245466..1245681 (-) 216 WP_002888853.1 exodeoxyribonuclease VII small subunit -
  ABXG87_RS05750 (Ssa13956_10750) xseA 1245671..1246999 (-) 1329 WP_004182655.1 exodeoxyribonuclease VII large subunit -
  ABXG87_RS05755 (Ssa13956_10760) - 1247186..1247947 (-) 762 WP_353551201.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62311.39 Da        Isoelectric Point: 4.5632

>NTDB_id=98100 ABXG87_RS05725 WP_004182651.1 1241662..1243332(-) (recN) [Streptococcus salivarius strain NBRC 13956]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=98100 ABXG87_RS05725 WP_004182651.1 1241662..1243332(-) (recN) [Streptococcus salivarius strain NBRC 13956]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAGATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGCAT
CAATGGACAGATGGTCAATTTAACGACACTTAAAGCCGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TACCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGTCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCAGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTTTGGAAGATGTCACTAAGCAACTCGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTAGATTATCTGGAAAATTCAAGTAAAGAATATAATCTTTTAACTGGCAATTCCAGTTCGTCAGATGCGAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTTGCGTCTGCAGAGACCTTACAAACGGCACGCCATCAAATTGCTA
CAGCCCTTGAAGCTGAGATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGTAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATCGTCTTCGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGCGATAATGAGACGACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCCTTGTTAAAGGTAGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.979

100

0.453

Multiple sequence alignment