Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACM2UG_RS18490 Genome accession   NZ_CP182398
Coordinates   3742631..3743110 (+) Length   159 a.a.
NCBI ID   WP_044068434.1    Uniprot ID   -
Organism   Escherichia coli strain EC6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3737631..3748110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2UG_RS18450 (ACM2UG_18450) - 3737944..3738579 (+) 636 WP_040220404.1 hypothetical protein -
  ACM2UG_RS18455 (ACM2UG_18455) - 3738615..3739067 (+) 453 WP_001020418.1 YfjS/YafY family lipoprotein -
  ACM2UG_RS18460 (ACM2UG_18460) - 3739064..3739516 (+) 453 WP_000734138.1 hypothetical protein -
  ACM2UG_RS18465 (ACM2UG_18465) - 3739579..3740121 (+) 543 WP_001104018.1 DUF4339 domain-containing protein -
  ACM2UG_RS18470 (ACM2UG_18470) - 3740181..3740633 (+) 453 WP_001061894.1 IrmA family protein -
  ACM2UG_RS18475 (ACM2UG_18475) - 3740710..3740943 (+) 234 WP_219358945.1 DUF905 family protein -
  ACM2UG_RS18480 (ACM2UG_18480) - 3741063..3741881 (+) 819 WP_001614356.1 DUF932 domain-containing protein -
  ACM2UG_RS18485 (ACM2UG_18485) - 3742149..3742619 (+) 471 WP_219358944.1 antirestriction protein -
  ACM2UG_RS18490 (ACM2UG_18490) radC 3742631..3743110 (+) 480 WP_044068434.1 RadC family protein Machinery gene
  ACM2UG_RS18495 (ACM2UG_18495) - 3743131..3743352 (+) 222 WP_044068431.1 DUF987 domain-containing protein -
  ACM2UG_RS18500 (ACM2UG_18500) - 3743442..3743735 (+) 294 WP_024223539.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACM2UG_RS18505 (ACM2UG_18505) - 3743786..3744163 (+) 378 WP_001194695.1 TA system toxin CbtA family protein -
  ACM2UG_RS18510 (ACM2UG_18510) - 3744160..3744651 (+) 492 Protein_3621 DUF5983 family protein -
  ACM2UG_RS18515 (ACM2UG_18515) - 3744691..3744885 (+) 195 WP_032155094.1 DUF957 domain-containing protein -
  ACM2UG_RS18520 (ACM2UG_18520) - 3744966..3745298 (+) 333 Protein_3623 restriction endonuclease subunit M -
  ACM2UG_RS18525 (ACM2UG_18525) - 3745275..3745810 (+) 536 Protein_3624 DUF4942 domain-containing protein -
  ACM2UG_RS18535 (ACM2UG_18535) dnaQ 3746152..3746883 (-) 732 WP_001340895.1 DNA polymerase III subunit epsilon -
  ACM2UG_RS18540 (ACM2UG_18540) rnhA 3746948..3747415 (+) 468 WP_152914087.1 ribonuclease HI -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17917.46 Da        Isoelectric Point: 6.7675

>NTDB_id=980983 ACM2UG_RS18490 WP_044068434.1 3742631..3743110(+) (radC) [Escherichia coli strain EC6]
MEQQLPLFARELAPADLQTVRKALSLLECQLRETRASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=980983 ACM2UG_RS18490 WP_044068434.1 3742631..3743110(+) (radC) [Escherichia coli strain EC6]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCTGCAGACAGTCAGGAAAGCCTTATCTCTGTT
GGAGTGCCAGCTACGTGAAACCCGGGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTGCGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCCTGCTGGACCACCTGGTGGTCGGTGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377

Multiple sequence alignment