Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ABXG87_RS04875 Genome accession   NZ_AP031488
Coordinates   1067006..1068076 (-) Length   356 a.a.
NCBI ID   WP_045772426.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062006..1073076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS04860 (Ssa13956_09020) pstB 1062729..1063487 (+) 759 WP_270617469.1 phosphate ABC transporter ATP-binding protein PstB -
  ABXG87_RS04865 (Ssa13956_09030) phoU 1063516..1064169 (+) 654 WP_014634489.1 phosphate signaling complex protein PhoU -
  ABXG87_RS04870 (Ssa13956_09040) - 1064303..1066843 (+) 2541 WP_353551118.1 M1 family metallopeptidase -
  ABXG87_RS04875 (Ssa13956_09050) xerS 1067006..1068076 (-) 1071 WP_045772426.1 tyrosine recombinase XerS Machinery gene
  ABXG87_RS04880 (Ssa13956_09060) - 1068329..1070134 (-) 1806 WP_342983003.1 DNA/RNA non-specific endonuclease -
  ABXG87_RS04885 (Ssa13956_09070) - 1070484..1071420 (+) 937 Protein_907 IS30 family transposase -
  ABXG87_RS04890 (Ssa13956_09090) - 1071493..1072482 (-) 990 WP_014633138.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41441.58 Da        Isoelectric Point: 9.3734

>NTDB_id=98093 ABXG87_RS04875 WP_045772426.1 1067006..1068076(-) (xerS) [Streptococcus salivarius strain NBRC 13956]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIESGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQMTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=98093 ABXG87_RS04875 WP_045772426.1 1067006..1068076(-) (xerS) [Streptococcus salivarius strain NBRC 13956]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTTGAGTATTATCAGTC
TAAACTATCGGTACCGTATTCTTTTACGACTTTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
AGTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTGCTTTATCTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAATGACCATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCGTATTTCT
ATCGTAACGTTATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCACGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAAACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTTTCTGAGG
CTGTTAATTTGGATCTTAAAGATATCAATCTAAAAATGATGGTCATCGACGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTTAATGTAGCAAGTTTTGCAAAACCGTATCTTGAAACTTATCTTAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTCCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAGATACGTGTGACTCCCCATAAACTACGACATACTTTGGCAACACGTCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGCCATGCTTCCACTCAAGTTACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834

Multiple sequence alignment