Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACNJZ6_RS25550 Genome accession   NZ_CP182387
Coordinates   5091521..5092513 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli strain Br_190_kylling     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5086521..5097513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNJZ6_RS25540 yieP 5089413..5090105 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  ACNJZ6_RS25545 mdtD 5090128..5091555 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  ACNJZ6_RS25550 cytR 5091521..5092513 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  ACNJZ6_RS25555 rbsK 5092517..5093446 (-) 930 WP_072651805.1 ribokinase -
  ACNJZ6_RS25560 rbsB 5093572..5094462 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACNJZ6_RS25565 rbsC 5094487..5095452 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACNJZ6_RS25570 rbsA 5095457..5096962 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  ACNJZ6_RS25575 rbsD 5096970..5097389 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=980922 ACNJZ6_RS25550 WP_000224455.1 5091521..5092513(-) (cytR) [Escherichia coli strain Br_190_kylling]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=980922 ACNJZ6_RS25550 WP_000224455.1 5091521..5092513(-) (cytR) [Escherichia coli strain Br_190_kylling]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364