Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAEY27_RS14100 Genome accession   NZ_CP151800
Coordinates   2986835..2987455 (-) Length   206 a.a.
NCBI ID   WP_342321242.1    Uniprot ID   -
Organism   Kosakonia sp. BYX6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981835..2992455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY27_RS14085 (AAEY27_14085) helD 2982065..2984119 (-) 2055 WP_342321239.1 DNA helicase IV -
  AAEY27_RS14090 (AAEY27_14090) - 2984242..2984688 (+) 447 WP_342321240.1 YccF domain-containing protein -
  AAEY27_RS14095 (AAEY27_14095) yccS 2984706..2986838 (+) 2133 WP_342321241.1 YccS family putative transporter -
  AAEY27_RS14100 (AAEY27_14100) sxy/tfoX 2986835..2987455 (-) 621 WP_342321242.1 TfoX/Sxy family DNA transformation protein Regulator
  AAEY27_RS14105 (AAEY27_14105) sulA 2987674..2988183 (+) 510 WP_342321243.1 SOS-induced cell division inhibitor SulA -
  AAEY27_RS14110 (AAEY27_14110) ompA 2988551..2989600 (+) 1050 WP_342321244.1 porin OmpA -
  AAEY27_RS14115 (AAEY27_14115) matP 2989694..2990152 (-) 459 WP_342321246.1 macrodomain Ter protein MatP -
  AAEY27_RS14120 (AAEY27_14120) - 2990335..2992089 (+) 1755 WP_342321247.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23607.27 Da        Isoelectric Point: 9.2775

>NTDB_id=980917 AAEY27_RS14100 WP_342321242.1 2986835..2987455(-) (sxy/tfoX) [Kosakonia sp. BYX6]
MEDLSYQRIYQSREYLNSLGQISYRAHFGGYSLSVDRIVFAMVAEGELYLRACDESAQYAVAKQAPLLMFNKRGRQLSLN
YYFVSDSLWGDRSLLLQLSTFALDAARREKAQREAQLRLRDLPNLSCQLEILLHEAGIQDAQTLRMLGAKVCWLRLRKMN
KQLSVKVLFALEGAIVGVHEAALPANRRQELIDWFNDVMKKGANPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=980917 AAEY27_RS14100 WP_342321242.1 2986835..2987455(-) (sxy/tfoX) [Kosakonia sp. BYX6]
ATGGAAGACCTGTCTTATCAACGGATATATCAGTCTCGCGAATACCTCAATTCACTCGGGCAAATTAGCTATCGAGCCCA
CTTCGGTGGTTATAGCCTGTCAGTGGATAGAATTGTTTTCGCGATGGTAGCAGAGGGGGAACTTTACTTACGCGCCTGTG
ATGAAAGTGCGCAATATGCTGTAGCCAAACAAGCTCCCTTGTTGATGTTCAACAAGAGGGGCCGTCAGTTATCGTTAAAT
TACTATTTTGTCAGCGACAGCTTGTGGGGCGATCGCTCGTTGTTGTTGCAACTTTCCACGTTTGCACTTGATGCGGCACG
GCGCGAAAAAGCGCAGCGTGAAGCTCAGTTGCGCCTGCGTGATTTACCCAATCTTTCCTGCCAGCTTGAGATTCTCCTTC
ACGAAGCTGGCATCCAGGATGCGCAGACGCTTCGTATGCTCGGTGCGAAAGTTTGCTGGCTAAGGCTACGGAAAATGAAC
AAGCAACTGAGTGTGAAAGTGCTCTTTGCGCTTGAAGGAGCCATCGTTGGGGTCCATGAGGCTGCACTCCCGGCAAACCG
CCGCCAGGAGTTGATCGATTGGTTCAACGACGTGATGAAGAAAGGGGCTAACCCTTTCTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(118-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.122

99.515

0.549

Multiple sequence alignment