Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAEU33_RS08215 Genome accession   NZ_CP151793
Coordinates   1762414..1763763 (-) Length   449 a.a.
NCBI ID   WP_172280513.1    Uniprot ID   -
Organism   Chryseobacterium sp. Chry.R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1757414..1768763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU33_RS08195 (AAEU33_08195) - 1757810..1758334 (+) 525 WP_345991956.1 DUF6702 family protein -
  AAEU33_RS08200 (AAEU33_08200) - 1758764..1759567 (+) 804 WP_345991958.1 hypothetical protein -
  AAEU33_RS08205 (AAEU33_08205) - 1759894..1760487 (-) 594 WP_345991960.1 ACP phosphodiesterase -
  AAEU33_RS08210 (AAEU33_08210) - 1760568..1762109 (-) 1542 WP_345991961.1 M12 family metallo-peptidase -
  AAEU33_RS08215 (AAEU33_08215) radA 1762414..1763763 (-) 1350 WP_172280513.1 DNA repair protein RadA Machinery gene
  AAEU33_RS08220 (AAEU33_08220) - 1763824..1764234 (+) 411 WP_345991963.1 hypothetical protein -
  AAEU33_RS08225 (AAEU33_08225) - 1764296..1764865 (+) 570 WP_345991964.1 YceI family protein -
  AAEU33_RS08230 (AAEU33_08230) - 1764993..1766600 (+) 1608 WP_172280507.1 CTP synthase -
  AAEU33_RS08235 (AAEU33_08235) yidC 1766794..1768593 (+) 1800 WP_345991966.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49866.48 Da        Isoelectric Point: 6.6124

>NTDB_id=980894 AAEU33_RS08215 WP_172280513.1 1762414..1763763(-) (radA) [Chryseobacterium sp. Chry.R1]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKVSSRSLPSSKTKQHVINIIEVEAIEEPRIKTPSEELNRVM
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLSEVQNPNCFLYTETSLEKILHEAKKL
EPDFIIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHFCFAGEIGLSGEIRPV
AQIEQRISEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=980894 AAEU33_RS08215 WP_172280513.1 1762414..1763763(-) (radA) [Chryseobacterium sp. Chry.R1]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAATACTCACAATGGATGGGACAATGCAAAAACTG
CGGGCAATGGAATACATTAGTTGAAGAGGTCGTGGAAAAGGTATCCAGCAGAAGTCTTCCTTCCTCGAAAACAAAGCAAC
ACGTCATTAATATCATTGAAGTTGAAGCAATTGAAGAACCCAGGATTAAAACACCCTCCGAGGAGCTCAACCGCGTAATG
GGAGGCGGAATTGTTTTAGGTTCTGTTACTTTGATTGGAGGAGAGCCGGGAATCGGAAAATCAACATTGCTTTTACAGCT
GGCATTAAAGATGAAGAAGAAAATATTTTATGTTTCTGGAGAAGAAAGCGCCTCACAGATTAAAATGAGAGCAGACCGGT
TATCTGAAGTTCAAAACCCAAATTGCTTCCTTTACACCGAAACTTCACTGGAAAAAATATTACATGAAGCCAAAAAATTA
GAGCCTGATTTTATCATTATCGACTCCATTCAAACTTTACAGTCCCAATTGATAGAAAGCTCACCGGGAACCGTTTCCCA
AATCAGAGAATGTTCGAATGAGATCATTAAATATGCTAAAGAGAACAATACTCCCGTTTTTCTGGTAGGTCACATTACTA
AAGACGGACAGATTGCCGGTCCAAAGGTTTTGGAACATATGGTAGATGTAGTTTTAAATTTCGATGGGGATAGAAATCAT
CTTTTCAGATTATTACGGGCTAATAAAAACCGTTTTGGTTCCACCTCGGAAATTGGAATCTATGAAATGATTTCCCAGGG
CTTAAAAGAGATCAAAAATCCATCTGAAATTTTAATTACAAAAAAATTCGAGGAGCTTTCCGGAAACTCCGTAGCTGTAA
CGCTTGAGGGAAATCGTCCTATGTTATTGGAGATTCAGGCACTGGTAAGTACGGCTGTTTATGGAACACCTCAAAGGAGT
TCTACCGGATTTGATGCTAAAAGATTGAATATGTTACTTGCCGTACTGGAGAAGAGAGCCGGATTCCAGCTTGGTGCTAA
AGACGTTTTTCTCAACATTACAGGGGGAATAAAGACAGATGACCCGGCCCTTGATCTCGCTGTAGTAGCCTCTATCCTTT
CATCTAATGAAGACATTGCAATATCCGAACATTTTTGCTTTGCCGGGGAAATCGGACTTAGCGGCGAAATCAGACCTGTT
GCTCAAATTGAACAACGCATCTCGGAAGCTGAAAAATTGGGATATGAAAAGATCTTTGTCTCCAACCTCAACAAAATACC
TAAAAGAAAATTCGGGATTAAAATTGAGGAAGTCAGTAAAATCGAAGATTTCCATGAACGAATCTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.908

100

0.499
  radA Streptococcus pneumoniae Rx1

48.908

100

0.499
  radA Streptococcus pneumoniae D39

48.908

100

0.499
  radA Streptococcus pneumoniae TIGR4

48.908

100

0.499
  radA Streptococcus mitis NCTC 12261

48.908

100

0.499
  radA Streptococcus mitis SK321

48.684

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.486

Multiple sequence alignment