Detailed information NTG0980867

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNJZ6_RS05585
• Genome accession: NZ_CP182387
• Coordinates: 1133476..1134465 (+)
• Length: 329 a.a.
• NCBI ID: WP_032343032.1
• Uniprot ID: -
• Organism: Escherichia coli strain Br_190_kylling
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1128476..1139465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNJZ6_RS05555	ispD	1128537..1129247 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACNJZ6_RS05560	ispF	1129247..1129726 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNJZ6_RS05565	truD	1129723..1130772 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACNJZ6_RS05570	surE	1130753..1131514 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNJZ6_RS05575	pcm	1131508..1132134 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNJZ6_RS05580	nlpD	1132319..1133413 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNJZ6_RS05585	rpoS	1133476..1134465 (+)	990	WP_032343032.1	RNA polymerase sigma factor RpoS	Regulator
ACNJZ6_RS05590	-	1134586..1134993 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACNJZ6_RS05595	-	1135140..1135733 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACNJZ6_RS05600	-	1135733..1137160 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACNJZ6_RS05605	-	1137171..1137407 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACNJZ6_RS05610	ygbN	1137446..1138810 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37843.73 Da
• Isoelectric Point: 4.5886

>NTDB_id=980867 ACNJZ6_RS05585 WP_032343032.1 1133476..1134465(+) (rpoS) [Escherichia coli strain Br_190_kylling]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEVYFAR
RALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQ
TRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADE
KENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG
LNIEALFRE

Nucleotide

• Length: 990 bp

>NTDB_id=980867 ACNJZ6_RS05585 WP_032343032.1 1133476..1134465(+) (rpoS) [Escherichia coli strain Br_190_kylling]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGTTTATTTTGCGCGT
CGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCGCCG
TTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGTTTG
ACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAACCAA
ACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCATAA
GCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTCGTC
TTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGATGAA
AAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAACGC
CAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTGAAA
TTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGG
CTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-87)

• Sigma-70 region 3 (Sigma70_r3) (173-247)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	98.176	0.714