Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAB109_RS19850 Genome accession   NZ_CP151780
Coordinates   3781617..3781991 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain IMGN6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3776617..3786991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB109_RS19830 (AAB109_19830) - 3777107..3777778 (-) 672 WP_043978471.1 response regulator transcription factor -
  AAB109_RS19835 (AAB109_19835) - 3778104..3778922 (+) 819 WP_028411023.1 phytoene/squalene synthase family protein -
  AAB109_RS19840 (AAB109_19840) - 3778958..3780907 (-) 1950 WP_342314829.1 FUSC family protein -
  AAB109_RS19845 (AAB109_19845) - 3781064..3781324 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  AAB109_RS19850 (AAB109_19850) nucA/comI 3781617..3781991 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAB109_RS19855 (AAB109_19855) comJ 3782027..3782434 (+) 408 WP_043978463.1 competence protein ComJ -
  AAB109_RS19860 (AAB109_19860) - 3782536..3783126 (-) 591 WP_237074202.1 CPBP family intramembrane glutamic endopeptidase -
  AAB109_RS19865 (AAB109_19865) helD 3783527..3785845 (-) 2319 WP_322552365.1 RNA polymerase recycling motor HelD -
  AAB109_RS19870 (AAB109_19870) - 3786090..3786215 (-) 126 WP_016765178.1 hypothetical protein -
  AAB109_RS19875 (AAB109_19875) - 3786355..3786870 (-) 516 WP_043978456.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=980859 AAB109_RS19850 WP_223269005.1 3781617..3781991(+) (nucA/comI) [Priestia megaterium strain IMGN6]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=980859 AAB109_RS19850 WP_223269005.1 3781617..3781991(+) (nucA/comI) [Priestia megaterium strain IMGN6]
ATGGGGCATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAATTATGATGCGACACTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGTACAATTGATCGCGACG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645

Multiple sequence alignment