Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAB109_RS16635 Genome accession   NZ_CP151780
Coordinates   3241359..3242309 (-) Length   316 a.a.
NCBI ID   WP_043981405.1    Uniprot ID   -
Organism   Priestia megaterium strain IMGN6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3236359..3247309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB109_RS16605 (AAB109_16605) - 3236788..3237042 (+) 255 WP_043981409.1 hypothetical protein -
  AAB109_RS16610 (AAB109_16610) - 3237103..3237243 (-) 141 WP_013057884.1 hypothetical protein -
  AAB109_RS16615 (AAB109_16615) - 3237503..3238357 (-) 855 WP_013057886.1 manganese catalase family protein -
  AAB109_RS16620 (AAB109_16620) - 3238687..3239643 (-) 957 WP_043981408.1 siderophore ABC transporter substrate-binding protein -
  AAB109_RS16625 (AAB109_16625) - 3239667..3240425 (-) 759 WP_237074394.1 ABC transporter ATP-binding protein -
  AAB109_RS16630 (AAB109_16630) - 3240419..3241366 (-) 948 WP_322552245.1 iron chelate uptake ABC transporter family permease subunit -
  AAB109_RS16635 (AAB109_16635) ceuB 3241359..3242309 (-) 951 WP_043981405.1 ABC transporter permease Machinery gene
  AAB109_RS16640 (AAB109_16640) - 3242863..3243669 (-) 807 WP_097822769.1 cell wall hydrolase -
  AAB109_RS16645 (AAB109_16645) - 3244032..3244286 (+) 255 WP_013057893.1 hypothetical protein -
  AAB109_RS16650 (AAB109_16650) - 3244368..3244532 (-) 165 WP_013057894.1 hypothetical protein -
  AAB109_RS16655 (AAB109_16655) - 3244845..3245189 (-) 345 WP_013057895.1 hypothetical protein -
  AAB109_RS16660 (AAB109_16660) - 3245232..3246263 (-) 1032 WP_097822770.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35009.22 Da        Isoelectric Point: 9.8785

>NTDB_id=980854 AAB109_RS16635 WP_043981405.1 3241359..3242309(-) (ceuB) [Priestia megaterium strain IMGN6]
MKFYQLILVFAVLAVSSLFIGVQDLSATDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYLYADKFTVAGMGESFSINLGMKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPYTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=980854 AAB109_RS16635 WP_043981405.1 3241359..3242309(-) (ceuB) [Priestia megaterium strain IMGN6]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTAGCAGTTTCGTCTCTTTTTATAGGCGTACAAGATCTGTCAGC
GACGGATCTCTTTCATTTAACAAAAGAAGAAAGTCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGCATTATTA
TGGCAGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCGCTAGTCGGTTTAATGCTCGGCAGTATCGTAAGTTCCTTAGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
GCTCGTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCA
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTTATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTGGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATCTCTATTG
GGCTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.333

94.937

0.506

Multiple sequence alignment