Detailed information NTG0980787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNJZ3_RS05375
• Genome accession: NZ_CP182383
• Coordinates: 1116806..1117798 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Br_178_kylling
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1111806..1122798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNJZ3_RS05350	surE	1112822..1113583 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNJZ3_RS05355	pcm	1113577..1114203 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNJZ3_RS05360	nlpD	1114388..1115179 (+)	792	Protein_1051	murein hydrolase activator NlpD	-
ACNJZ3_RS05370	-	1116438..1116743 (+)	306	Protein_1053	peptidoglycan DD-metalloendopeptidase family protein	-
ACNJZ3_RS05375	rpoS	1116806..1117798 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNJZ3_RS05380	ygbN	1117892..1119256 (-)	1365	WP_000104441.1	GntP family transporter	-
ACNJZ3_RS05385	ygbM	1119345..1120121 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACNJZ3_RS05390	ygbL	1120126..1120764 (-)	639	WP_001278994.1	aldolase	-
ACNJZ3_RS05395	otnK	1120856..1122022 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=980787 ACNJZ3_RS05375 WP_000081550.1 1116806..1117798(+) (rpoS) [Escherichia coli strain Br_178_kylling]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980787 ACNJZ3_RS05375 WP_000081550.1 1116806..1117798(+) (rpoS) [Escherichia coli strain Br_178_kylling]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715