Detailed information NTG0980676

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNJZ8_RS20645
• Genome accession: NZ_CP182374
• Coordinates: 4215116..4216108 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081577.1
• Uniprot ID: -
• Organism: Escherichia coli strain bR_120_Kylling
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4210116..4221108

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNJZ8_RS20620	ygbN	4210771..4212135 (+)	1365	WP_000104439.1	GntP family transporter	-
ACNJZ8_RS20625	-	4212174..4212410 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACNJZ8_RS20630	-	4212421..4213848 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACNJZ8_RS20635	-	4213848..4214441 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACNJZ8_RS20640	-	4214588..4214995 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACNJZ8_RS20645	rpoS	4215116..4216108 (-)	993	WP_000081577.1	RNA polymerase sigma factor RpoS	Regulator
ACNJZ8_RS20650	nlpD	4216171..4217265 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNJZ8_RS20655	pcm	4217450..4218076 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNJZ8_RS20660	surE	4218070..4218831 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNJZ8_RS20665	truD	4218812..4219861 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACNJZ8_RS20670	ispF	4219858..4220337 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNJZ8_RS20675	ispD	4220337..4221047 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38014.92 Da
• Isoelectric Point: 4.5597

>NTDB_id=980676 ACNJZ8_RS20645 WP_000081577.1 4215116..4216108(-) (rpoS) [Escherichia coli strain bR_120_Kylling]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLVLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980676 ACNJZ8_RS20645 WP_000081577.1 4215116..4216108(-) (rpoS) [Escherichia coli strain bR_120_Kylling]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGTGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712