Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA22_RS17140 Genome accession   NZ_CP151717
Coordinates   3577045..3577863 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F15-01A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572045..3582863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA22_RS17125 (AAFA22_17125) pilE 3572262..3572687 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AAFA22_RS17130 (AAFA22_17130) pilY2 3572684..3573166 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA22_RS17135 (AAFA22_17135) pilY1 3573179..3577033 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA22_RS17140 (AAFA22_17140) pilX 3577045..3577863 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA22_RS17145 (AAFA22_17145) pilW 3577860..3578861 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA22_RS17150 (AAFA22_17150) pilV 3578862..3579422 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA22_RS17155 (AAFA22_17155) fimU 3579416..3579889 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA22_RS17160 (AAFA22_17160) ispH 3580059..3581009 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA22_RS17165 (AAFA22_17165) gmk 3581132..3581761 (+) 630 WP_000015937.1 guanylate kinase -
  AAFA22_RS17170 (AAFA22_17170) rpoZ 3581834..3582112 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA22_RS17175 (AAFA22_17175) - 3582151..3582281 (+) 131 Protein_3358 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980606 AAFA22_RS17140 WP_000149374.1 3577045..3577863(-) (pilX) [Acinetobacter baumannii strain F15-01A]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980606 AAFA22_RS17140 WP_000149374.1 3577045..3577863(-) (pilX) [Acinetobacter baumannii strain F15-01A]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment