Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AAFA16_RS08275 | Genome accession | NZ_CP151715 |
| Coordinates | 1711182..1711562 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain F15-01B | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1706182..1716562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA16_RS08245 (AAFA16_08245) | kdsB | 1707085..1707846 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AAFA16_RS08250 (AAFA16_08250) | - | 1707858..1708838 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| AAFA16_RS08255 (AAFA16_08255) | - | 1708850..1709191 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AAFA16_RS08260 (AAFA16_08260) | - | 1709209..1709982 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AAFA16_RS08265 (AAFA16_08265) | - | 1710020..1710628 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AAFA16_RS08270 (AAFA16_08270) | - | 1710638..1711192 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| AAFA16_RS08275 (AAFA16_08275) | xcpV | 1711182..1711562 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AAFA16_RS08280 (AAFA16_08280) | xcpW | 1711562..1712263 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AAFA16_RS08285 (AAFA16_08285) | gspK | 1712263..1713222 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| AAFA16_RS08290 (AAFA16_08290) | - | 1713452..1714048 (+) | 597 | WP_000908451.1 | 6-carboxytetrahydropterin synthase | - |
| AAFA16_RS08295 (AAFA16_08295) | ung | 1714099..1714812 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AAFA16_RS08300 (AAFA16_08300) | - | 1714809..1715933 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AAFA16_RS08305 (AAFA16_08305) | tadA | 1715940..1716443 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=980546 AAFA16_RS08275 WP_000836910.1 1711182..1711562(+) (xcpV) [Acinetobacter baumannii strain F15-01B]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=980546 AAFA16_RS08275 WP_000836910.1 1711182..1711562(+) (xcpV) [Acinetobacter baumannii strain F15-01B]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |