Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ABXG87_RS00515 Genome accession   NZ_AP031488
Coordinates   83992..86442 (+) Length   816 a.a.
NCBI ID   WP_041817177.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 78992..91442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS00490 (Ssa13956_00580) ahpC 79890..80450 (-) 561 WP_002886340.1 alkyl hydroperoxide reductase subunit C -
  ABXG87_RS00495 (Ssa13956_00590) rpsB 80723..81490 (+) 768 WP_002886342.1 30S ribosomal protein S2 -
  ABXG87_RS00500 (Ssa13956_00600) tsf 81601..82641 (+) 1041 WP_002886343.1 translation elongation factor Ts -
  ABXG87_RS00505 (Ssa13956_00610) - 82748..83218 (-) 471 WP_002886344.1 small multi-drug export protein -
  ABXG87_RS00510 (Ssa13956_00620) - 83536..83991 (+) 456 WP_013989925.1 CtsR family transcriptional regulator -
  ABXG87_RS00515 (Ssa13956_00630) clpC 83992..86442 (+) 2451 WP_041817177.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ABXG87_RS00520 - 86429..87923 (-) 1495 Protein_65 IS1182-like element ISSth2 family transposase -
  ABXG87_RS00525 (Ssa13956_00660) pbp3 88137..89393 (-) 1257 WP_002886347.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABXG87_RS00530 (Ssa13956_00670) pbp3 89538..90785 (-) 1248 WP_013989929.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 90410.77 Da        Isoelectric Point: 5.6275

>NTDB_id=98047 ABXG87_RS00515 WP_041817177.1 83992..86442(+) (clpC) [Streptococcus salivarius strain NBRC 13956]
MTTYSRKMQAIFHRAQLEAERFGSPFLETWHVLLAMVEVPGSVAYLTFTDFEDRIRAEEIETAAVLAMEKSPKDLSESDI
IDLRAQSHALEVMLQEAEGIASVTGAVEVGSEHVLMAFLLHKDLMVCRLLEVAGFQYKDDSDKPRIIDLRRSLERYAGLS
KQDLKAIHDLRKPKKSKASGNFANMMQPPQSSTGELSDYTKDLTAVAELDALDPVIGREKEISRMIQVLSRKTKNNPVLV
GEAGVGKTALALGLAQRIASGEVPFELADMRILELDMMSVVAGTRFRGDFEERMNQIIDEIEADGKIILFIDELHTIIGS
GSGIDSTLDAANILKPALARGTLHMVGATTQAEYQKHIEKDAALSRRFAKITIEEPSVPEAIDILKGLRSSYEDYHRVTI
TDEAVETAVKAAHRYLTSKNLPDSAIDLLDEASATVQGRIKKEAKREITPLDEALLSGDMKAAVKQYKASQKAKLPEPAL
VDADQIMQTLSRLSGIPVEKMTQADSKRYLNLEAELHKRVIGQDEAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVG
KTELAKALAEVLFDDESALLRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNIL
LQVLDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTIGFGAQDISHNHQAMQSRIMEELKKAYRPEFINRIDEKVV
FHSLEEEQLREIVKIMMKPLVSALAEKGIDLKFQPAALKHLAKDGYDVEMGARPLRRTIQTQVEDKLSELLLGGQVVSGQ
TLKIGCSKDKLTFTVV

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=98047 ABXG87_RS00515 WP_041817177.1 83992..86442(+) (clpC) [Streptococcus salivarius strain NBRC 13956]
ATGACGACATATTCAAGAAAAATGCAGGCCATTTTCCATCGTGCTCAGCTTGAGGCAGAGCGTTTTGGAAGTCCTTTCTT
GGAGACTTGGCATGTGCTTCTCGCTATGGTTGAGGTTCCAGGATCTGTAGCCTACCTAACATTTACTGATTTTGAGGACC
GTATTCGTGCGGAAGAGATTGAGACCGCTGCTGTACTAGCGATGGAGAAAAGTCCAAAAGACTTGTCTGAATCAGATATT
ATCGATTTACGTGCACAGTCACATGCTTTAGAGGTTATGTTGCAAGAGGCAGAGGGAATTGCTAGTGTGACTGGTGCTGT
AGAGGTAGGGTCTGAACATGTATTGATGGCCTTCCTTCTTCATAAGGATTTGATGGTTTGTCGTCTCCTTGAAGTTGCTG
GTTTTCAATATAAGGATGACAGCGATAAGCCTCGTATTATCGATTTACGACGTTCTTTGGAGCGTTACGCAGGTCTTAGT
AAGCAAGATTTGAAGGCCATTCATGACCTTCGTAAGCCTAAAAAATCAAAGGCATCAGGAAATTTTGCTAATATGATGCA
GCCTCCTCAATCTTCTACTGGGGAACTGTCAGATTATACCAAAGACTTAACGGCAGTAGCCGAATTAGATGCTCTTGATC
CTGTTATTGGACGTGAGAAAGAAATTTCACGCATGATTCAGGTTTTGAGTCGTAAAACGAAGAATAACCCAGTTCTTGTG
GGTGAAGCAGGTGTTGGTAAGACGGCACTTGCGCTTGGCTTAGCACAGCGTATTGCTTCAGGCGAAGTACCTTTTGAGTT
GGCTGATATGCGTATCTTAGAGCTTGATATGATGAGTGTGGTTGCAGGAACACGTTTCCGTGGCGATTTCGAAGAACGTA
TGAATCAGATCATTGATGAGATTGAAGCTGATGGAAAAATCATTCTTTTTATTGACGAATTGCATACGATTATTGGTTCT
GGTTCAGGTATTGATAGCACCTTAGATGCGGCGAATATTTTGAAACCCGCTCTAGCACGTGGAACTCTTCATATGGTTGG
AGCAACTACTCAAGCTGAGTACCAGAAGCATATTGAGAAAGATGCAGCTCTTTCTCGCCGTTTTGCTAAGATTACAATTG
AGGAGCCAAGTGTACCTGAGGCGATTGATATTCTAAAAGGCCTACGTTCGTCTTATGAAGACTATCATCGTGTAACGATT
ACTGATGAGGCGGTTGAGACAGCAGTCAAGGCAGCCCACCGTTATTTGACGAGTAAAAACTTGCCTGACTCTGCCATTGA
TCTTTTAGATGAAGCGAGTGCAACTGTTCAAGGTCGTATCAAAAAAGAAGCCAAACGTGAGATAACGCCTTTGGATGAAG
CGCTTCTATCTGGTGATATGAAGGCTGCTGTTAAACAATATAAAGCTAGCCAAAAAGCAAAATTACCAGAACCTGCCTTG
GTAGATGCAGATCAGATTATGCAAACCCTTAGTCGTCTATCAGGTATTCCTGTTGAGAAGATGACTCAGGCAGATAGCAA
GCGTTACTTGAATCTGGAAGCAGAGCTTCATAAACGTGTTATTGGTCAAGACGAAGCAGTTTCAGCGATTAGTCGTGCTA
TTCGTCGTAACCAGTCAGGTATTCGTACTGGAAAACGTCCGATTGGTTCCTTCATGTTCCTTGGACCTACTGGTGTTGGT
AAGACAGAGTTGGCCAAGGCTTTGGCGGAAGTTCTCTTTGATGATGAGTCAGCTTTGCTTCGCTTTGACATGTCAGAATA
CATGGAAAAATTTGCGGCTAGCCGCCTTAATGGTGCTCCTCCAGGTTATGTTGGATATGATGAGGGTGGTGAATTAACAG
AGAAAGTTCGCAATAAGCCTTACTCAGTTCTCCTCTTTGACGAGGTGGAAAAGGCTCACCCAGATATTTTCAACATCCTC
TTACAGGTTTTGGATGATGGTGTCTTGACGGATAGTCGAGGTCGTAAAGTCGATTTCTCAAATACCATTATCATTATGAC
TTCGAACTTGGGAGCGACTGCTCTTCGTGATGATAAGACTATTGGATTTGGTGCCCAAGACATTTCTCATAATCACCAAG
CAATGCAGTCACGTATCATGGAAGAACTTAAGAAGGCCTACCGTCCAGAGTTTATCAACCGTATTGATGAGAAGGTTGTC
TTCCATAGTCTAGAGGAAGAGCAACTTCGTGAGATTGTCAAGATTATGATGAAACCGTTGGTATCAGCTTTGGCTGAAAA
AGGGATTGACTTGAAATTCCAACCAGCTGCTCTCAAGCATTTAGCTAAAGATGGCTATGATGTTGAGATGGGTGCTCGTC
CATTACGTCGCACGATTCAAACTCAAGTGGAGGACAAGTTATCTGAGCTCTTACTAGGTGGTCAAGTAGTTAGTGGACAA
ACTCTTAAAATCGGCTGCTCGAAAGATAAATTAACCTTTACAGTAGTGTAA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(378-457)

ATPase family associated with various cellular activities (AAA) (AAA)

(238-370)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(108-135)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(15-46)

AAA domain (Cdc48 subfamily) (AAA_2)

(546-717)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(724-804)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus thermophilus LMG 18311

94.73

100

0.947
  clpC Streptococcus thermophilus LMD-9

94.608

100

0.946
  clpC Streptococcus mutans UA159

72.549

100

0.725
  clpC Streptococcus pneumoniae TIGR4

66.912

100

0.669
  clpC Streptococcus pneumoniae Rx1

66.789

100

0.668
  clpC Streptococcus pneumoniae D39

66.789

100

0.668
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

50.421

100

0.513
  clpC Bacillus subtilis subsp. subtilis str. 168

47.509

100

0.479
  clpE Streptococcus mutans UA159

47.604

76.716

0.365

Multiple sequence alignment