Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAFA14_RS01675 Genome accession   NZ_CP151711
Coordinates   351337..352155 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain F15-06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346337..357155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA14_RS01640 (AAFA14_01640) - 346919..347049 (-) 131 Protein_314 hypothetical protein -
  AAFA14_RS01645 (AAFA14_01645) rpoZ 347088..347366 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA14_RS01650 (AAFA14_01650) gmk 347439..348068 (-) 630 WP_000015937.1 guanylate kinase -
  AAFA14_RS01655 (AAFA14_01655) ispH 348191..349141 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA14_RS01660 (AAFA14_01660) fimU 349311..349784 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA14_RS01665 (AAFA14_01665) pilV 349778..350338 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA14_RS01670 (AAFA14_01670) pilW 350339..351340 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA14_RS01675 (AAFA14_01675) pilX 351337..352155 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA14_RS01680 (AAFA14_01680) pilY1 352167..356021 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AAFA14_RS01685 (AAFA14_01685) pilY2 356034..356516 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AAFA14_RS01690 (AAFA14_01690) pilE 356513..356938 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=980443 AAFA14_RS01675 WP_000149374.1 351337..352155(+) (pilX) [Acinetobacter baumannii strain F15-06]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=980443 AAFA14_RS01675 WP_000149374.1 351337..352155(+) (pilX) [Acinetobacter baumannii strain F15-06]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment