Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABXG87_RS00215 Genome accession   NZ_AP031488
Coordinates   28919..29692 (+) Length   257 a.a.
NCBI ID   WP_070849938.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23919..34692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS00190 (Ssa13956_00150) tnpA 24449..24913 (+) 465 WP_002886285.1 IS200/IS605 family transposase -
  ABXG87_RS00195 (Ssa13956_00160) - 25224..26189 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  ABXG87_RS00200 (Ssa13956_00170) - 26297..26683 (-) 387 WP_045768432.1 IS110 family transposase -
  ABXG87_RS00205 (Ssa13956_00180) - 26703..27464 (-) 762 WP_111686594.1 IS110 family transposase -
  ABXG87_RS00210 (Ssa13956_00190) - 27757..28932 (+) 1176 WP_073686932.1 pyridoxal phosphate-dependent aminotransferase -
  ABXG87_RS00215 (Ssa13956_00200) recO 28919..29692 (+) 774 WP_070849938.1 DNA repair protein RecO Machinery gene
  ABXG87_RS00220 (Ssa13956_00210) plsX 29904..30908 (+) 1005 WP_215644074.1 phosphate acyltransferase PlsX -
  ABXG87_RS00225 (Ssa13956_00220) - 30908..31153 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  ABXG87_RS00230 (Ssa13956_00230) purC 31412..32119 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29666.75 Da        Isoelectric Point: 4.8532

>NTDB_id=98041 ABXG87_RS00215 WP_070849938.1 28919..29692(+) (recO) [Streptococcus salivarius strain NBRC 13956]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKQKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=98041 ABXG87_RS00215 WP_070849938.1 28919..29692(+) (recO) [Streptococcus salivarius strain NBRC 13956]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGGAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTGCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAAATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTAGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTAGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACAAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.241

98.444

0.623

Multiple sequence alignment