Detailed information NTG0980409

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNJS6_RS17005
• Genome accession: NZ_CP182336
• Coordinates: 3465627..3466619 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A134_1EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3460627..3471619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNJS6_RS16985	otnK	3461403..3462569 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACNJS6_RS16990	ygbL	3462661..3463299 (+)	639	WP_001278994.1	aldolase	-
ACNJS6_RS16995	ygbM	3463304..3464080 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACNJS6_RS17000	ygbN	3464169..3465533 (+)	1365	WP_000104441.1	GntP family transporter	-
ACNJS6_RS17005	rpoS	3465627..3466619 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNJS6_RS17010	nlpD	3466682..3467776 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNJS6_RS17015	pcm	3467961..3468587 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNJS6_RS17020	surE	3468581..3469342 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNJS6_RS17025	truD	3469323..3470372 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACNJS6_RS17030	ispF	3470369..3470848 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNJS6_RS17035	ispD	3470848..3471558 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=980409 ACNJS6_RS17005 WP_000081550.1 3465627..3466619(-) (rpoS) [Escherichia coli strain A134_1EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980409 ACNJS6_RS17005 WP_000081550.1 3465627..3466619(-) (rpoS) [Escherichia coli strain A134_1EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715