Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | AAFA26_RS16505 | Genome accession | NZ_CP151705 |
| Coordinates | 3490082..3490555 (-) | Length | 157 a.a. |
| NCBI ID | WP_001214065.1 | Uniprot ID | N9K1Q3 |
| Organism | Acinetobacter baumannii strain F19-02 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3485082..3495555
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA26_RS16490 (AAFA26_16490) | pilX | 3487711..3488529 (-) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| AAFA26_RS16495 (AAFA26_16495) | pilW | 3488526..3489527 (-) | 1002 | WP_000079197.1 | PilW family protein | Machinery gene |
| AAFA26_RS16500 (AAFA26_16500) | pilV | 3489528..3490088 (-) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| AAFA26_RS16505 (AAFA26_16505) | fimU | 3490082..3490555 (-) | 474 | WP_001214065.1 | GspH/FimT family pseudopilin | Machinery gene |
| AAFA26_RS16510 (AAFA26_16510) | ispH | 3490725..3491675 (-) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AAFA26_RS16515 (AAFA26_16515) | gmk | 3491798..3492427 (+) | 630 | WP_000015937.1 | guanylate kinase | - |
| AAFA26_RS16520 (AAFA26_16520) | rpoZ | 3492500..3492778 (+) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| AAFA26_RS16525 (AAFA26_16525) | - | 3492817..3492947 (+) | 131 | Protein_3228 | hypothetical protein | - |
| AAFA26_RS16530 (AAFA26_16530) | - | 3492987..3495092 (+) | 2106 | WP_001117590.1 | HD domain-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16837.43 Da Isoelectric Point: 8.5355
>NTDB_id=980327 AAFA26_RS16505 WP_001214065.1 3490082..3490555(-) (fimU) [Acinetobacter baumannii strain F19-02]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=980327 AAFA26_RS16505 WP_001214065.1 3490082..3490555(-) (fimU) [Acinetobacter baumannii strain F19-02]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |