Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACM4Z8_RS17255 Genome accession   NZ_CP182308
Coordinates   3503817..3504422 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC100     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3498817..3509422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM4Z8_RS17235 (ACM4Z8_17235) aes 3498854..3499813 (+) 960 WP_416846681.1 acetyl esterase -
  ACM4Z8_RS17240 (ACM4Z8_17240) hemH 3499810..3500772 (-) 963 WP_001250088.1 ferrochelatase -
  ACM4Z8_RS17245 (ACM4Z8_17245) adk 3501008..3501652 (-) 645 WP_001220233.1 adenylate kinase -
  ACM4Z8_RS17250 (ACM4Z8_17250) htpG 3501833..3503707 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  ACM4Z8_RS17255 (ACM4Z8_17255) recR 3503817..3504422 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ACM4Z8_RS17260 (ACM4Z8_17260) ybaB 3504422..3504751 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ACM4Z8_RS17265 (ACM4Z8_17265) dnaX 3504804..3506735 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  ACM4Z8_RS17270 (ACM4Z8_17270) apt 3506864..3507415 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ACM4Z8_RS17275 (ACM4Z8_17275) ybaN 3507568..3507945 (-) 378 WP_001188905.1 DUF454 family protein -
  ACM4Z8_RS17280 (ACM4Z8_17280) priC 3508015..3508542 (+) 528 WP_097311389.1 primosomal replication protein N'' -
  ACM4Z8_RS17285 (ACM4Z8_17285) rsmS 3508556..3508717 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=980252 ACM4Z8_RS17255 WP_001195025.1 3503817..3504422(-) (recR) [Escherichia coli strain EC100]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=980252 ACM4Z8_RS17255 WP_001195025.1 3503817..3504422(-) (recR) [Escherichia coli strain EC100]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment