Detailed information NTG0980221

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM4Z8_RS05150
• Genome accession: NZ_CP182308
• Coordinates: 1055278..1056270 (+)
• Length: 330 a.a.
• NCBI ID: WP_021570342.1
• Uniprot ID: -
• Organism: Escherichia coli strain EC100
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1050278..1061270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM4Z8_RS05120 (ACM4Z8_05120)	ispD	1050339..1051049 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM4Z8_RS05125 (ACM4Z8_05125)	ispF	1051049..1051528 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM4Z8_RS05130 (ACM4Z8_05130)	truD	1051525..1052574 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACM4Z8_RS05135 (ACM4Z8_05135)	surE	1052555..1053316 (+)	762	WP_097311449.1	5'/3'-nucleotidase SurE	-
ACM4Z8_RS05140 (ACM4Z8_05140)	pcm	1053310..1053936 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM4Z8_RS05145 (ACM4Z8_05145)	nlpD	1054121..1055215 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACM4Z8_RS05150 (ACM4Z8_05150)	rpoS	1055278..1056270 (+)	993	WP_021570342.1	RNA polymerase sigma factor RpoS	Regulator
ACM4Z8_RS05155 (ACM4Z8_05155)	-	1056391..1056798 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACM4Z8_RS05160 (ACM4Z8_05160)	-	1056945..1057538 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACM4Z8_RS05165 (ACM4Z8_05165)	-	1057538..1058965 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACM4Z8_RS05170 (ACM4Z8_05170)	-	1058976..1059212 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACM4Z8_RS05175 (ACM4Z8_05175)	ygbN	1059251..1060615 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37919.80 Da
• Isoelectric Point: 4.5229

>NTDB_id=980221 ACM4Z8_RS05150 WP_021570342.1 1055278..1056270(+) (rpoS) [Escherichia coli strain EC100]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFCFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980221 ACM4Z8_RS05150 WP_021570342.1 1055278..1056270(+) (rpoS) [Escherichia coli strain EC100]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCTGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712