Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABXH21_RS05905 Genome accession   NZ_AP031472
Coordinates   1303929..1304741 (+) Length   270 a.a.
NCBI ID   WP_227522725.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298929..1309741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS05885 (SKB0120_11480) - 1298939..1299772 (-) 834 WP_353550803.1 META domain-containing protein -
  ABXH21_RS05890 (SKB0120_11490) - 1299970..1300608 (-) 639 WP_050325417.1 peroxiredoxin -
  ABXH21_RS05895 (SKB0120_11500) dusB 1300788..1301786 (-) 999 WP_353550804.1 tRNA dihydrouridine synthase DusB -
  ABXH21_RS05900 (SKB0120_11520) rlmN 1302382..1303581 (+) 1200 WP_353550805.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABXH21_RS05905 (SKB0120_11530) pilF 1303929..1304741 (+) 813 WP_227522725.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABXH21_RS05910 (SKB0120_11540) - 1304743..1305651 (+) 909 WP_007115372.1 helix-turn-helix domain-containing protein -
  ABXH21_RS05915 (SKB0120_11550) ispG 1305720..1306835 (+) 1116 WP_353550806.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABXH21_RS05920 (SKB0120_11560) hisS 1306883..1308181 (+) 1299 WP_353550807.1 histidine--tRNA ligase -
  ABXH21_RS05925 (SKB0120_11570) - 1308247..1309068 (+) 822 WP_353550808.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29738.96 Da        Isoelectric Point: 9.6336

>NTDB_id=98019 ABXH21_RS05905 WP_227522725.1 1303929..1304741(+) (pilF) [Moraxella osloensis strain NBRC 115781]
MIGLSSFSLCLTGCTTTRQVTTQTVTASDPSRWEKNPEEIARIRTAIAAEYIRGGKLDDAKRQLESALKSYPKSAEANDM
MGVLLQQEGSPRNMQKAEAYFKNAIALNPDFSQANNNYGVYLAQLSRNQEAIAQFQIAGSALGYDGRASALENLGRTALK
VKNKPLAIQSFIKALDANRQSIVARTELIDILLTDGKFLEAQALYNDLVKIIGQANLDPRTLSQGIRLAKLANNPMEMQK
LAQQLLDRYPLSDEAKQIRSGLLTPTSTWK

Nucleotide


Download         Length: 813 bp        

>NTDB_id=98019 ABXH21_RS05905 WP_227522725.1 1303929..1304741(+) (pilF) [Moraxella osloensis strain NBRC 115781]
ATGATTGGCCTTTCAAGCTTCAGCCTTTGCCTAACCGGTTGTACCACTACCCGACAAGTCACCACGCAGACAGTTACTGC
CAGTGACCCCAGTCGTTGGGAAAAAAATCCAGAAGAAATCGCCAGAATTCGCACCGCGATTGCCGCTGAATATATTCGTG
GTGGTAAATTAGACGATGCCAAACGACAGTTAGAAAGTGCATTAAAGTCTTATCCAAAGTCAGCAGAAGCCAATGACATG
ATGGGTGTGTTATTGCAGCAAGAAGGCAGCCCGCGCAATATGCAAAAAGCCGAAGCTTATTTTAAAAACGCCATCGCACT
CAATCCTGACTTTAGTCAAGCAAACAACAACTATGGCGTCTATCTCGCCCAACTCAGTCGTAACCAAGAAGCGATTGCCC
AGTTTCAAATTGCCGGTTCTGCGTTAGGGTATGACGGTCGTGCCAGTGCGTTAGAGAATTTAGGGCGTACAGCATTAAAG
GTCAAAAACAAACCACTGGCGATACAGTCATTTATCAAAGCACTCGATGCCAATCGCCAAAGCATCGTCGCCCGTACAGA
GCTGATTGATATTTTATTGACGGATGGCAAATTTTTGGAGGCGCAGGCACTGTATAATGATTTGGTTAAAATTATTGGTC
AAGCCAACCTTGACCCGCGCACTTTATCGCAAGGGATTAGGCTTGCCAAACTTGCGAACAATCCCATGGAAATGCAAAAA
TTAGCGCAGCAGCTTTTAGACCGCTATCCACTAAGCGATGAAGCAAAGCAGATTCGTTCTGGACTTTTAACCCCAACGTC
AACTTGGAAATAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_16)

(93-137)

Tetratricopeptide repeat (TPR_16)

(48-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

43.396

98.148

0.426
  pilF Acinetobacter baylyi ADP1

42.586

97.407

0.415

Multiple sequence alignment