Detailed information NTG0980141

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM40Z_RS05055
• Genome accession: NZ_CP182198
• Coordinates: 1038788..1039780 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC130
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1033788..1044780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM40Z_RS05025 (ACM40Z_05025)	ispD	1033849..1034559 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM40Z_RS05030 (ACM40Z_05030)	ispF	1034559..1035038 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM40Z_RS05035 (ACM40Z_05035)	truD	1035035..1036084 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACM40Z_RS05040 (ACM40Z_05040)	surE	1036065..1036826 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACM40Z_RS05045 (ACM40Z_05045)	pcm	1036820..1037446 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM40Z_RS05050 (ACM40Z_05050)	nlpD	1037631..1038725 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACM40Z_RS05055 (ACM40Z_05055)	rpoS	1038788..1039780 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACM40Z_RS05060 (ACM40Z_05060)	ygbN	1039874..1041238 (-)	1365	WP_000104456.1	GntP family transporter	-
ACM40Z_RS05065 (ACM40Z_05065)	ygbM	1041327..1042103 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACM40Z_RS05070 (ACM40Z_05070)	ygbL	1042108..1042746 (-)	639	WP_001278994.1	aldolase	-
ACM40Z_RS05075 (ACM40Z_05075)	otnK	1042743..1044005 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=980141 ACM40Z_RS05055 WP_000081550.1 1038788..1039780(+) (rpoS) [Escherichia coli strain EC130]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980141 ACM40Z_RS05055 WP_000081550.1 1038788..1039780(+) (rpoS) [Escherichia coli strain EC130]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715