Detailed information NTG0980060

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM2ZA_RS05280
• Genome accession: NZ_CP182191
• Coordinates: 1096588..1097580 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1091588..1102580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM2ZA_RS05250 (ACM2ZA_05250)	ispD	1091649..1092359 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM2ZA_RS05255 (ACM2ZA_05255)	ispF	1092359..1092838 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM2ZA_RS05260 (ACM2ZA_05260)	truD	1092835..1093884 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACM2ZA_RS05265 (ACM2ZA_05265)	surE	1093865..1094626 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACM2ZA_RS05270 (ACM2ZA_05270)	pcm	1094620..1095246 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM2ZA_RS05275 (ACM2ZA_05275)	nlpD	1095431..1096525 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACM2ZA_RS05280 (ACM2ZA_05280)	rpoS	1096588..1097580 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACM2ZA_RS05285 (ACM2ZA_05285)	ygbN	1097674..1099038 (-)	1365	WP_000104459.1	GntP family transporter	-
ACM2ZA_RS05290 (ACM2ZA_05290)	ygbM	1099127..1099903 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACM2ZA_RS05295 (ACM2ZA_05295)	ygbL	1099908..1100546 (-)	639	WP_001278994.1	aldolase	-
ACM2ZA_RS05300 (ACM2ZA_05300)	otnK	1100543..1101805 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=980060 ACM2ZA_RS05280 WP_000081550.1 1096588..1097580(+) (rpoS) [Escherichia coli strain EC24]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=980060 ACM2ZA_RS05280 WP_000081550.1 1096588..1097580(+) (rpoS) [Escherichia coli strain EC24]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715