Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ACM2ZA_RS03995 Genome accession   NZ_CP182191
Coordinates   823166..824383 (-) Length   405 a.a.
NCBI ID   WP_098704211.1    Uniprot ID   -
Organism   Escherichia coli strain EC24     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 818166..829383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2ZA_RS03980 (ACM2ZA_03980) - 818281..819390 (+) 1110 WP_000227440.1 CDP-glycerol--glycerophosphate glycerophosphotransferase -
  ACM2ZA_RS03985 (ACM2ZA_03985) - 819409..821514 (+) 2106 WP_115800915.1 capsular biosynthesis protein -
  ACM2ZA_RS03990 (ACM2ZA_03990) - 821891..822775 (-) 885 WP_000038852.1 glycosyltransferase family 8 protein -
  ACM2ZA_RS03995 (ACM2ZA_03995) kpsS 823166..824383 (-) 1218 WP_098704211.1 capsule biosynthesis protein Regulator
  ACM2ZA_RS04000 (ACM2ZA_04000) - 824418..826445 (-) 2028 WP_098704212.1 capsular polysaccharide biosynthesis protein -
  ACM2ZA_RS04005 (ACM2ZA_04005) kdsB 826442..827182 (-) 741 WP_001554265.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACM2ZA_RS04010 (ACM2ZA_04010) - 827192..828868 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 48218.60 Da        Isoelectric Point: 9.9478

>NTDB_id=980056 ACM2ZA_RS03995 WP_098704211.1 823166..824383(-) (kpsS) [Escherichia coli strain EC24]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGGDIITDYSRY
HCSIE

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=980056 ACM2ZA_RS03995 WP_098704211.1 823166..824383(-) (kpsS) [Escherichia coli strain EC24]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGGGGATATAATTACAGATTACTCCCGTTAT
CATTGTTCTATAGAATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

96.049

0.383

Multiple sequence alignment