Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACM2XU_RS25450 Genome accession   NZ_CP182182
Coordinates   5162647..5163627 (-) Length   326 a.a.
NCBI ID   WP_416509927.1    Uniprot ID   -
Organism   Escherichia coli strain EC19     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5157647..5168627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2XU_RS25440 (ACM2XU_25440) yieP 5160539..5161231 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ACM2XU_RS25445 (ACM2XU_25445) mdtD 5161254..5162681 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACM2XU_RS25450 (ACM2XU_25450) cytR 5162647..5163627 (-) 981 WP_416509927.1 ribose operon transcriptional repressor RbsR Regulator
  ACM2XU_RS25455 (ACM2XU_25455) rbsK 5163631..5164560 (-) 930 WP_001361791.1 ribokinase -
  ACM2XU_RS25460 (ACM2XU_25460) rbsB 5164686..5165576 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACM2XU_RS25465 (ACM2XU_25465) rbsC 5165601..5166566 (-) 966 WP_022646318.1 ribose ABC transporter permease -
  ACM2XU_RS25470 (ACM2XU_25470) rbsA 5166571..5168076 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACM2XU_RS25475 (ACM2XU_25475) rbsD 5168084..5168503 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36122.33 Da        Isoelectric Point: 5.2098

>NTDB_id=980034 ACM2XU_RS25450 WP_416509927.1 5162647..5163627(-) (cytR) [Escherichia coli strain EC19]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPIL
MERGSA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=980034 ACM2XU_RS25450 WP_416509927.1 5162647..5163627(-) (cytR) [Escherichia coli strain EC19]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCAGAGTTACAGGTTCCGCAGGATATCGCGGTGAT
TGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAGATGAACTGGGGG
AGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTTACTCCGATTCTG
ATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-325)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.374
  cytR Vibrio cholerae C6706

38.762

94.172

0.365

Multiple sequence alignment