Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   AAFA12_RS01680 Genome accession   NZ_CP151696
Coordinates   345731..346732 (+) Length   333 a.a.
NCBI ID   WP_000079197.1    Uniprot ID   A0A009TMX3
Organism   Acinetobacter baumannii strain F19-10-MH12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340731..351732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA12_RS01650 (AAFA12_01650) - 342311..342441 (-) 131 Protein_316 hypothetical protein -
  AAFA12_RS01655 (AAFA12_01655) rpoZ 342480..342758 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAFA12_RS01660 (AAFA12_01660) gmk 342831..343460 (-) 630 WP_000015937.1 guanylate kinase -
  AAFA12_RS01665 (AAFA12_01665) ispH 343583..344533 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAFA12_RS01670 (AAFA12_01670) fimU 344703..345176 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  AAFA12_RS01675 (AAFA12_01675) pilV 345170..345730 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AAFA12_RS01680 (AAFA12_01680) pilW 345731..346732 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AAFA12_RS01685 (AAFA12_01685) pilX 346729..347547 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAFA12_RS01690 (AAFA12_01690) pilY1 347559..351413 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=980024 AAFA12_RS01680 WP_000079197.1 345731..346732(+) (pilW) [Acinetobacter baumannii strain F19-10-MH12]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=980024 AAFA12_RS01680 WP_000079197.1 345731..346732(+) (pilW) [Acinetobacter baumannii strain F19-10-MH12]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment