Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABXH21_RS01205 Genome accession   NZ_AP031472
Coordinates   252758..253120 (+) Length   120 a.a.
NCBI ID   WP_050324979.1    Uniprot ID   -
Organism   Moraxella osloensis strain NBRC 115781     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 247758..258120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH21_RS01195 (SKB0120_02280) - 250370..251635 (-) 1266 WP_353551699.1 efflux RND transporter periplasmic adaptor subunit -
  ABXH21_RS01200 (SKB0120_02290) pilG 252125..252511 (+) 387 WP_050324978.1 twitching motility response regulator PilG Regulator
  ABXH21_RS01205 (SKB0120_02300) pilH 252758..253120 (+) 363 WP_050324979.1 response regulator Machinery gene
  ABXH21_RS01210 (SKB0120_02310) - 253126..253662 (+) 537 WP_065254123.1 chemotaxis protein CheW -
  ABXH21_RS01215 (SKB0120_02320) - 254073..255116 (+) 1044 Protein_229 methyl-accepting chemotaxis protein -
  ABXH21_RS01220 (SKB0120_02330) - 255215..255430 (+) 216 WP_353551701.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13603.69 Da        Isoelectric Point: 5.6153

>NTDB_id=98000 ABXH21_RS01205 WP_050324979.1 252758..253120(+) (pilH) [Moraxella osloensis strain NBRC 115781]
MAKILVVDDSPSEMAKFRDILTRHQHEVIEAHTGEDGIQKANEFFPDVILMDVVMPEMNGFQATRKLTRDPKTSHIPVII
ISTKNQEADRVWGKRQGARDYLSKPITEEALITVICAVME

Nucleotide


Download         Length: 363 bp        

>NTDB_id=98000 ABXH21_RS01205 WP_050324979.1 252758..253120(+) (pilH) [Moraxella osloensis strain NBRC 115781]
ATGGCCAAAATCTTAGTAGTTGATGATTCACCATCAGAAATGGCAAAATTTCGAGATATTTTGACTCGTCATCAGCACGA
AGTCATTGAAGCGCATACAGGCGAGGATGGAATTCAAAAAGCCAATGAGTTTTTCCCCGATGTGATTTTGATGGATGTGG
TCATGCCAGAGATGAACGGCTTCCAAGCAACCCGCAAACTTACCCGTGACCCAAAAACCAGTCATATCCCTGTCATCATC
ATCAGTACTAAAAATCAAGAAGCTGACCGCGTCTGGGGCAAGCGCCAAGGCGCACGGGATTATCTCAGCAAGCCGATTAC
AGAAGAAGCCTTAATCACTGTAATCTGCGCCGTGATGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

40.87

95.833

0.392

Multiple sequence alignment