Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | AAFA20_RS16840 | Genome accession | NZ_CP151692 |
| Coordinates | 3533350..3533823 (-) | Length | 157 a.a. |
| NCBI ID | WP_001214065.1 | Uniprot ID | N9K1Q3 |
| Organism | Acinetobacter baumannii strain F19-10-CH6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3528350..3538823
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA20_RS16825 (AAFA20_16825) | pilX | 3530979..3531797 (-) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| AAFA20_RS16830 (AAFA20_16830) | pilW | 3531794..3532795 (-) | 1002 | WP_000079197.1 | PilW family protein | Machinery gene |
| AAFA20_RS16835 (AAFA20_16835) | pilV | 3532796..3533356 (-) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| AAFA20_RS16840 (AAFA20_16840) | fimU | 3533350..3533823 (-) | 474 | WP_001214065.1 | GspH/FimT family pseudopilin | Machinery gene |
| AAFA20_RS16845 (AAFA20_16845) | ispH | 3533993..3534943 (-) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AAFA20_RS16850 (AAFA20_16850) | gmk | 3535066..3535695 (+) | 630 | WP_000015937.1 | guanylate kinase | - |
| AAFA20_RS16855 (AAFA20_16855) | rpoZ | 3535768..3536046 (+) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| AAFA20_RS16860 (AAFA20_16860) | - | 3536085..3536215 (+) | 131 | Protein_3295 | hypothetical protein | - |
| AAFA20_RS16865 (AAFA20_16865) | - | 3536255..3538360 (+) | 2106 | WP_001117590.1 | HD domain-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16837.43 Da Isoelectric Point: 8.5355
>NTDB_id=979957 AAFA20_RS16840 WP_001214065.1 3533350..3533823(-) (fimU) [Acinetobacter baumannii strain F19-10-CH6]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=979957 AAFA20_RS16840 WP_001214065.1 3533350..3533823(-) (fimU) [Acinetobacter baumannii strain F19-10-CH6]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |