Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AAFA20_RS08280 | Genome accession | NZ_CP151692 |
| Coordinates | 1710911..1711291 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain F19-10-CH6 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1705911..1716291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFA20_RS08250 (AAFA20_08250) | kdsB | 1706814..1707575 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AAFA20_RS08255 (AAFA20_08255) | - | 1707587..1708567 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| AAFA20_RS08260 (AAFA20_08260) | - | 1708579..1708920 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AAFA20_RS08265 (AAFA20_08265) | - | 1708938..1709711 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AAFA20_RS08270 (AAFA20_08270) | - | 1709749..1710357 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AAFA20_RS08275 (AAFA20_08275) | - | 1710367..1710921 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| AAFA20_RS08280 (AAFA20_08280) | xcpV | 1710911..1711291 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AAFA20_RS08285 (AAFA20_08285) | xcpW | 1711291..1711992 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AAFA20_RS08290 (AAFA20_08290) | gspK | 1711992..1712951 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| AAFA20_RS08295 (AAFA20_08295) | - | 1713181..1713777 (+) | 597 | WP_000908451.1 | 6-carboxytetrahydropterin synthase | - |
| AAFA20_RS08300 (AAFA20_08300) | ung | 1713828..1714541 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AAFA20_RS08305 (AAFA20_08305) | - | 1714538..1715662 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AAFA20_RS08310 (AAFA20_08310) | tadA | 1715669..1716172 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=979941 AAFA20_RS08280 WP_000836910.1 1710911..1711291(+) (xcpV) [Acinetobacter baumannii strain F19-10-CH6]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=979941 AAFA20_RS08280 WP_000836910.1 1710911..1711291(+) (xcpV) [Acinetobacter baumannii strain F19-10-CH6]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |