Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACNHKR_RS19440 Genome accession   NZ_CP182159
Coordinates   3987591..3988973 (-) Length   460 a.a.
NCBI ID   WP_416503375.1    Uniprot ID   -
Organism   Escherichia coli strain CUWW12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3982591..3993973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKR_RS19430 (ACNHKR_19430) ettA 3984364..3986031 (+) 1668 WP_000046749.1 energy-dependent translational throttle protein EttA -
  ACNHKR_RS19435 (ACNHKR_19435) nadR 3986338..3987570 (-) 1233 WP_000093813.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACNHKR_RS19440 (ACNHKR_19440) radA/sms 3987591..3988973 (-) 1383 WP_416503375.1 DNA repair protein RadA Machinery gene
  ACNHKR_RS19445 (ACNHKR_19445) serB 3989022..3989990 (-) 969 WP_001132956.1 phosphoserine phosphatase -
  ACNHKR_RS19450 (ACNHKR_19450) ytjB 3990096..3990740 (+) 645 WP_000124615.1 YtjB family periplasmic protein -
  ACNHKR_RS19455 (ACNHKR_19455) lplA 3990768..3991784 (+) 1017 WP_000105890.1 lipoate--protein ligase LplA -
  ACNHKR_RS19460 (ACNHKR_19460) - 3991816..3992079 (+) 264 WP_000566155.1 helix-turn-helix domain-containing protein -
  ACNHKR_RS19465 (ACNHKR_19465) deoD 3992240..3992959 (-) 720 WP_000224879.1 purine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49431.98 Da        Isoelectric Point: 7.1936

>NTDB_id=979854 ACNHKR_RS19440 WP_416503375.1 3987591..3988973(-) (radA/sms) [Escherichia coli strain CUWW12]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRSLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=979854 ACNHKR_RS19440 WP_416503375.1 3987591..3988973(-) (radA/sms) [Escherichia coli strain CUWW12]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGC
CTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAACGGTGGCGCGTAACGAGCGTCTCAGTGGCT
ATGCCGGTAGCGCCGGGGTGGCAAAAGTCCAGAAACTCTCCGACATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGA
TTTAAAGAGTTCGACCGAGTATTAGGCGGCGGCGTGGTACCGGGAAGTGCCATTCTGATTGGCGGTAACCCAGGCGCGGG
GAAATCCACGCTGTTGCTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAG
CAGATCTGCCTGATTGCTGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCCATCCAGGTGATGCATATGGCGGATGT
ACAGTCATCGCCTGGTAGCGTGGCGCAGGTGCGTGAAACGGCGGCTTATTTGACACGCTTCGCCAAAACGCGCGGTGTGG
CGATTGTCATGGTTGGACACGTAACCAAAGATGGCTCGCTGGCGGGCCCTAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTTTTGGATGGCGATGCCGACTCCCGTTTTCGCACCTTGCGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGCGTCTTCGCGATGACCGAACAGGGGCTGCGTGAAGTCAGCAACCCTTCGGCAATTTTCTTAAGTCGCGGAGATGAAG
TGACCTCCGGCAGCTCCGTGATGGTGGTGTGGGAAGGAACGCGTCCGTTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGCGAATCCGCGCCGCGTGGCGGTAGGTCTGGAGCAAAACCGTCTGGCAATCCTGCTGGCTGTCTTGCACCG
TCACGGTGGTCTGCAAATGGCCGATCAGGATGTATTTGTGAACGTGGTCGGTGGTGTGAAGGTAACCGAAACCAGTGCCG
ACTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGTGACAGATCGCTACCGCAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAGCGAATCTCTGAAGCGGCGAAACACGGTTTTCGCCGGGC
GATTGTTCCGGCGGCTAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.608

99.348

0.463
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428