Detailed information NTG0979738

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNHKT_RS09565
• Genome accession: NZ_CP182154
• Coordinates: 1978333..1979325 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUWW11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1973333..1984325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNHKT_RS09545 (ACNHKT_09545)	otnK	1974108..1975370 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ACNHKT_RS09550 (ACNHKT_09550)	ygbL	1975367..1976005 (+)	639	WP_001278994.1	aldolase	-
ACNHKT_RS09555 (ACNHKT_09555)	ygbM	1976010..1976786 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACNHKT_RS09560 (ACNHKT_09560)	ygbN	1976875..1978239 (+)	1365	WP_001402448.1	GntP family transporter	-
ACNHKT_RS09565 (ACNHKT_09565)	rpoS	1978333..1979325 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNHKT_RS09570 (ACNHKT_09570)	nlpD	1979388..1980482 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNHKT_RS09575 (ACNHKT_09575)	pcm	1980667..1981293 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNHKT_RS09580 (ACNHKT_09580)	surE	1981287..1982048 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNHKT_RS09585 (ACNHKT_09585)	truD	1982029..1983078 (-)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
ACNHKT_RS09590 (ACNHKT_09590)	ispF	1983075..1983554 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNHKT_RS09595 (ACNHKT_09595)	ispD	1983554..1984264 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=979738 ACNHKT_RS09565 WP_000081550.1 1978333..1979325(-) (rpoS) [Escherichia coli strain CUWW11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=979738 ACNHKT_RS09565 WP_000081550.1 1978333..1979325(-) (rpoS) [Escherichia coli strain CUWW11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715