Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AADZ70_RS16685 Genome accession   NZ_CP151679
Coordinates   3297350..3297787 (-) Length   145 a.a.
NCBI ID   WP_016936798.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3292350..3302787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS16650 (AADZ70_16650) - 3292869..3293016 (-) 148 Protein_3225 hypothetical protein -
  AADZ70_RS16655 (AADZ70_16655) - 3293155..3294357 (+) 1203 WP_342007348.1 GTP-binding protein -
  AADZ70_RS16660 (AADZ70_16660) - 3294421..3295557 (+) 1137 WP_029575240.1 zinc-dependent alcohol dehydrogenase -
  AADZ70_RS16665 (AADZ70_16665) - 3295574..3296008 (+) 435 WP_016936803.1 RDD family protein -
  AADZ70_RS16670 (AADZ70_16670) - 3296081..3296404 (+) 324 WP_188154736.1 YckD family protein -
  AADZ70_RS16675 (AADZ70_16675) - 3296540..3296776 (+) 237 Protein_3230 family 1 glycosylhydrolase -
  AADZ70_RS16680 (AADZ70_16680) nin/comJ 3296930..3297328 (-) 399 WP_047476185.1 competence protein ComJ Regulator
  AADZ70_RS16685 (AADZ70_16685) nucA/comI 3297350..3297787 (-) 438 WP_016936798.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AADZ70_RS16690 (AADZ70_16690) hxlB 3298144..3298701 (-) 558 WP_342007349.1 6-phospho-3-hexuloisomerase -
  AADZ70_RS16695 (AADZ70_16695) hxlA 3298698..3299333 (-) 636 WP_016936796.1 3-hexulose-6-phosphate synthase -
  AADZ70_RS16700 (AADZ70_16700) - 3299566..3299928 (+) 363 WP_016936795.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16024.36 Da        Isoelectric Point: 9.0058

>NTDB_id=979721 AADZ70_RS16685 WP_016936798.1 3297350..3297787(-) (nucA/comI) [Bacillus sp. YBsi01]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKGAIKEGHPSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=979721 AADZ70_RS16685 WP_016936798.1 3297350..3297787(-) (nucA/comI) [Bacillus sp. YBsi01]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTTGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAAAGCGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGGCGCGATAAAAGAAGGACATCCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTAAAAACGGGGTACGATAGAGATGAATGGCCCATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGGGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.222

86.897

0.628

Multiple sequence alignment