Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AADZ70_RS14970 Genome accession   NZ_CP151679
Coordinates   2979913..2981025 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2959900..3006261 2979913..2981025 within 0


Gene organization within MGE regions


Location: 2959900..3006261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS14865 (AADZ70_14865) ssbA 2959900..2960418 (-) 519 WP_047477329.1 single-stranded DNA-binding protein SsbA Machinery gene
  AADZ70_RS14870 (AADZ70_14870) rpsF 2960458..2960745 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  AADZ70_RS14875 (AADZ70_14875) ychF 2960857..2961957 (-) 1101 WP_016937324.1 redox-regulated ATPase YchF -
  AADZ70_RS14880 (AADZ70_14880) - 2962085..2964088 (-) 2004 WP_342007284.1 molybdopterin-dependent oxidoreductase -
  AADZ70_RS14885 (AADZ70_14885) - 2964135..2964341 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  AADZ70_RS14890 (AADZ70_14890) - 2964427..2965431 (-) 1005 WP_016937322.1 membrane protein -
  AADZ70_RS14895 (AADZ70_14895) - 2965595..2966098 (+) 504 WP_064778480.1 GNAT family N-acetyltransferase -
  AADZ70_RS14900 (AADZ70_14900) yyaC 2966255..2966869 (+) 615 WP_327814973.1 spore protease YyaC -
  AADZ70_RS14905 (AADZ70_14905) - 2966899..2967750 (-) 852 WP_016937319.1 ParB/RepB/Spo0J family partition protein -
  AADZ70_RS14910 (AADZ70_14910) soj 2967743..2968504 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  AADZ70_RS14915 (AADZ70_14915) noc 2968802..2969653 (-) 852 WP_016937318.1 nucleoid occlusion protein -
  AADZ70_RS14920 (AADZ70_14920) rsmG 2969775..2970494 (-) 720 WP_016937317.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  AADZ70_RS14925 (AADZ70_14925) mnmG 2970508..2972394 (-) 1887 WP_016937316.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  AADZ70_RS14930 (AADZ70_14930) mnmE 2972411..2973790 (-) 1380 WP_014419389.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  AADZ70_RS14935 (AADZ70_14935) jag 2974079..2974720 (-) 642 WP_045925729.1 RNA-binding cell elongation regulator Jag/EloR -
  AADZ70_RS14940 (AADZ70_14940) spoIIIJ 2974717..2975466 (-) 750 WP_014471334.1 YidC family membrane integrase SpoIIIJ -
  AADZ70_RS14945 (AADZ70_14945) rnpA 2975627..2975977 (-) 351 WP_016937314.1 ribonuclease P protein component -
  AADZ70_RS14950 (AADZ70_14950) rpmH 2976131..2976265 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  AADZ70_RS14955 (AADZ70_14955) dnaA 2976885..2978225 (+) 1341 WP_016937312.1 chromosomal replication initiator protein DnaA -
  AADZ70_RS14960 (AADZ70_14960) dnaN 2978410..2979546 (+) 1137 WP_021494589.1 DNA polymerase III subunit beta -
  AADZ70_RS14965 (AADZ70_14965) rlbA 2979682..2979897 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  AADZ70_RS14970 (AADZ70_14970) recF 2979913..2981025 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  AADZ70_RS14975 (AADZ70_14975) - 2981043..2981288 (+) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  AADZ70_RS14980 (AADZ70_14980) gyrB 2981345..2983261 (+) 1917 WP_029575274.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AADZ70_RS14985 (AADZ70_14985) gyrA 2983478..2985937 (+) 2460 WP_016937309.1 DNA gyrase subunit A -
  AADZ70_RS15015 (AADZ70_15015) - 2991337..2992287 (-) 951 WP_064778339.1 YaaC family protein -
  AADZ70_RS15020 (AADZ70_15020) guaB 2992408..2993874 (+) 1467 WP_003150717.1 IMP dehydrogenase -
  AADZ70_RS15025 (AADZ70_15025) dacA 2994027..2995358 (+) 1332 WP_016937307.1 D-alanyl-D-alanine carboxypeptidase -
  AADZ70_RS15030 (AADZ70_15030) pdxS 2995555..2996439 (+) 885 WP_016937306.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  AADZ70_RS15035 (AADZ70_15035) pdxT 2996461..2997051 (+) 591 WP_269773813.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  AADZ70_RS15040 (AADZ70_15040) serS 2997371..2998648 (+) 1278 WP_095242204.1 serine--tRNA ligase -
  AADZ70_RS15045 (AADZ70_15045) - 2998660..2999805 (-) 1146 WP_342007285.1 glycerate kinase -
  AADZ70_RS15055 (AADZ70_15055) dck 3000247..3000900 (-) 654 WP_016937302.1 deoxyadenosine/deoxycytidine kinase -
  AADZ70_RS15060 (AADZ70_15060) - 3000897..3001520 (-) 624 WP_013350734.1 deoxynucleoside kinase -
  AADZ70_RS15065 (AADZ70_15065) - 3001616..3002905 (-) 1290 WP_197083944.1 glycoside hydrolase family 18 protein -
  AADZ70_RS15070 (AADZ70_15070) - 3002971..3003483 (-) 513 WP_045926878.1 isochorismatase family cysteine hydrolase -
  AADZ70_RS15075 (AADZ70_15075) tadA 3003605..3004087 (+) 483 WP_045926873.1 tRNA adenosine(34) deaminase TadA -
  AADZ70_RS15085 (AADZ70_15085) dnaX 3004570..3006261 (+) 1692 WP_342007286.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=979714 AADZ70_RS14970 WP_007409910.1 2979913..2981025(+) (recF) [Bacillus sp. YBsi01]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=979714 AADZ70_RS14970 WP_007409910.1 2979913..2981025(+) (recF) [Bacillus sp. YBsi01]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAGAACGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGTTAGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCACATAGAACAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCGGAGGACTTAAATCTCGTCAAAGGCAGCCCGCAGGTCAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCTGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
GGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGGGGCGTCACCTTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAACTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment