Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AADZ70_RS07810 Genome accession   NZ_CP151679
Coordinates   1585010..1585777 (-) Length   255 a.a.
NCBI ID   WP_016938920.1    Uniprot ID   A0AAE2NXC9
Organism   Bacillus sp. YBsi01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1580010..1590777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS07790 (AADZ70_07790) - 1580211..1581023 (-) 813 WP_016938923.1 pyruvate, water dikinase regulatory protein -
  AADZ70_RS07795 (AADZ70_07795) ccpN 1581049..1581687 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  AADZ70_RS07800 (AADZ70_07800) glyS 1581789..1583828 (-) 2040 WP_342007955.1 glycine--tRNA ligase subunit beta -
  AADZ70_RS07805 (AADZ70_07805) glyQ 1583821..1584708 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  AADZ70_RS07810 (AADZ70_07810) recO 1585010..1585777 (-) 768 WP_016938920.1 DNA repair protein RecO Machinery gene
  AADZ70_RS07815 (AADZ70_07815) - 1585814..1585957 (-) 144 WP_007408286.1 YqzL family protein -
  AADZ70_RS07820 (AADZ70_07820) era 1586113..1587018 (-) 906 WP_016938919.1 GTPase Era -
  AADZ70_RS07825 (AADZ70_07825) - 1586999..1587409 (-) 411 WP_016938918.1 cytidine deaminase -
  AADZ70_RS07830 (AADZ70_07830) - 1587531..1587905 (-) 375 WP_016938917.1 diacylglycerol kinase family protein -
  AADZ70_RS07835 (AADZ70_07835) ybeY 1587886..1588359 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  AADZ70_RS07840 (AADZ70_07840) - 1588360..1590492 (-) 2133 WP_342007956.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29373.05 Da        Isoelectric Point: 8.7962

>NTDB_id=979686 AADZ70_RS07810 WP_016938920.1 1585010..1585777(-) (recO) [Bacillus sp. YBsi01]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSIRDNGFICHRCFEKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKHETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=979686 AADZ70_RS07810 WP_016938920.1 1585010..1585777(-) (recO) [Bacillus sp. YBsi01]
ATGCTGACAAAATGTGAAGGAATCGTGCTTCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGTGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCTTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGGCTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAGGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAGGGGACTGACCCGGACGTGATCACCTTTA
TCGTTCAGATGAAAATGCTTGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCGGGACGGG
ACGTTTCATTTTTCCATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTTGGCAGCGTTTCGTTAAAGCACGAAA
CCAAAAATGAAATAAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAGCGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment