Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AADZ70_RS06250 Genome accession   NZ_CP151679
Coordinates   1255604..1256212 (+) Length   202 a.a.
NCBI ID   WP_029575375.1    Uniprot ID   A0AAE2TI94
Organism   Bacillus sp. YBsi01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1250604..1261212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS06210 (AADZ70_06210) - 1251625..1252131 (-) 507 WP_016939058.1 PTS glucose transporter subunit IIA -
  AADZ70_RS06215 (AADZ70_06215) - 1252269..1252682 (+) 414 WP_045927220.1 Hsp20/alpha crystallin family protein -
  AADZ70_RS06220 (AADZ70_06220) - 1252712..1253185 (-) 474 WP_064779092.1 YppG family protein -
  AADZ70_RS06225 (AADZ70_06225) - 1253373..1253555 (+) 183 WP_003153532.1 YppF family protein -
  AADZ70_RS06230 (AADZ70_06230) - 1253593..1253961 (-) 369 WP_045927218.1 YppE family protein -
  AADZ70_RS06235 (AADZ70_06235) - 1254007..1254252 (-) 246 WP_016939062.1 DUF5446 family protein -
  AADZ70_RS06240 (AADZ70_06240) sspM 1254457..1254561 (+) 105 WP_016939063.1 acid-soluble spore protein SspM -
  AADZ70_RS06245 (AADZ70_06245) - 1254600..1255562 (-) 963 WP_342007878.1 DUF2515 domain-containing protein -
  AADZ70_RS06250 (AADZ70_06250) recU 1255604..1256212 (+) 609 WP_029575375.1 Holliday junction resolvase RecU Machinery gene
  AADZ70_RS06255 (AADZ70_06255) - 1256251..1259031 (+) 2781 WP_342007879.1 PBP1A family penicillin-binding protein -
  AADZ70_RS06260 (AADZ70_06260) - 1259109..1259600 (-) 492 WP_342007880.1 YpoC family protein -
  AADZ70_RS06265 (AADZ70_06265) nth 1259597..1260256 (-) 660 WP_016939068.1 endonuclease III -
  AADZ70_RS06270 (AADZ70_06270) dnaD 1260275..1260973 (-) 699 WP_016939069.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=979676 AADZ70_RS06250 WP_029575375.1 1255604..1256212(+) (recU) [Bacillus sp. YBsi01]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQGQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=979676 AADZ70_RS06250 WP_029575375.1 1255604..1256212(+) (recU) [Bacillus sp. YBsi01]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCGGTTA
TTCACAAAAAGCCGACTCCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAATGGGATTTATAAAGGGCGCTACATTGATTTCGAAGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGACCATCAAATTGAGCACATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAGTCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGGACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment