Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AADZ70_RS04565 Genome accession   NZ_CP151679
Coordinates   894186..894554 (+) Length   122 a.a.
NCBI ID   WP_223152250.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 889186..899554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS04560 (AADZ70_04560) - 892617..893828 (-) 1212 WP_064779007.1 cytochrome P450 -
  AADZ70_RS04565 (AADZ70_04565) nucA/comI 894186..894554 (+) 369 WP_223152250.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AADZ70_RS04570 (AADZ70_04570) - 894615..895370 (+) 756 WP_095240688.1 YoaK family protein -
  AADZ70_RS04575 (AADZ70_04575) - 895405..895767 (-) 363 WP_016936035.1 hypothetical protein -
  AADZ70_RS04580 (AADZ70_04580) - 895949..897277 (-) 1329 WP_342007787.1 S8 family peptidase -
  AADZ70_RS04585 (AADZ70_04585) - 897442..897675 (+) 234 WP_016936033.1 hypothetical protein -
  AADZ70_RS04590 (AADZ70_04590) - 897930..898637 (+) 708 WP_045926688.1 poly-gamma-glutamate hydrolase family protein -
  AADZ70_RS04595 (AADZ70_04595) - 898698..899150 (+) 453 WP_045926687.1 OsmC family protein -
  AADZ70_RS04600 (AADZ70_04600) - 899164..899517 (-) 354 WP_223152198.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13258.73 Da        Isoelectric Point: 6.4585

>NTDB_id=979675 AADZ70_RS04565 WP_223152250.1 894186..894554(+) (nucA/comI) [Bacillus sp. YBsi01]
MSAGTSENTARAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAVC
TEGGAGADIRYVTPSDNRGAGSWVGNQMSRYSDGTKVLFIVQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=979675 AADZ70_RS04565 WP_223152250.1 894186..894554(+) (nucA/comI) [Bacillus sp. YBsi01]
ATGAGCGCCGGCACTTCGGAGAATACTGCCCGAGCCGCGTCCAGATACGATCAGGTGCTTTATTTCCCGCTGTTAAAATA
TCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCACTCTGACATTTGTACAATTGATCGCGGCGGAGCTG
AGGATAGAAGGAAAGAATCATTGAAAGGAATTCCGACAAAGCCCGGATTTGACCGTGATGAATGGCCGATGGCGGTCTGT
ACAGAAGGCGGAGCTGGAGCTGATATCAGATATGTAACACCTTCGGACAATCGCGGGGCCGGCTCATGGGTTGGAAATCA
AATGAGCAGGTATTCCGACGGCACGAAAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(28-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.627

96.721

0.557

Multiple sequence alignment