Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AADZ70_RS04005 Genome accession   NZ_CP151679
Coordinates   718907..719806 (+) Length   299 a.a.
NCBI ID   WP_342007754.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 713907..724806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS03985 (AADZ70_03985) - 714595..716298 (+) 1704 WP_342007753.1 glycosyl transferase -
  AADZ70_RS03990 (AADZ70_03990) - 716295..716576 (+) 282 WP_016936135.1 FlhB-like flagellar biosynthesis protein -
  AADZ70_RS03995 (AADZ70_03995) sucC 716751..717908 (+) 1158 WP_016936134.1 ADP-forming succinate--CoA ligase subunit beta -
  AADZ70_RS04000 (AADZ70_04000) sucD 717937..718839 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  AADZ70_RS04005 (AADZ70_04005) dprA 718907..719806 (+) 900 WP_342007754.1 DNA-processing protein DprA Machinery gene
  AADZ70_RS04010 (AADZ70_04010) topA 719988..722063 (+) 2076 WP_045926121.1 type I DNA topoisomerase -
  AADZ70_RS04015 (AADZ70_04015) trmFO 722128..723435 (+) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AADZ70_RS04020 (AADZ70_04020) xerC 723505..724422 (+) 918 WP_016936129.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32809.92 Da        Isoelectric Point: 9.2234

>NTDB_id=979671 AADZ70_RS04005 WP_342007754.1 718907..719806(+) (dprA) [Bacillus sp. YBsi01]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKDSELDEVLSDYRREGITVI
PISSSRYPSWLKTIYDPPAVLFAKGNTQLLGKGRKIGIVGTRKPTDDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=979671 AADZ70_RS04005 WP_342007754.1 718907..719806(+) (dprA) [Bacillus sp. YBsi01]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATTATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCCCTGTCTTTTTTACGGGATCCGCATCCATTAACCGTTTTATCAGAAGGGAAAACAGCACCGAAAGCCA
TTTTTCGAGAAATAGAGCGCAAGGATTCGGAACTCGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACAGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACGATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGAACAC
GCAGCTTCTTGGAAAAGGCCGAAAAATTGGGATTGTAGGCACGCGGAAACCGACGGACGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCCGAACTCTCAAAAAAAGGCTGGGTCATCGTAAGCGGGCTTGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATTTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCACTTTC
CGATGAGAAACCGTATAATCAGCGGATTAAGTGAAGGAATTGTAGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTATCAGGCCCTCGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTGTGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388

Multiple sequence alignment