Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AADZ70_RS03200 Genome accession   NZ_CP151679
Coordinates   558254..558538 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus sp. YBsi01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 553254..563538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS03180 (AADZ70_03180) - 554499..555407 (+) 909 WP_342007714.1 ketopantoate reductase family protein -
  AADZ70_RS03185 (AADZ70_03185) - 555437..556669 (-) 1233 WP_342007715.1 aminopeptidase -
  AADZ70_RS03190 (AADZ70_03190) - 556770..556904 (-) 135 WP_016936273.1 protein YkpC -
  AADZ70_RS03195 (AADZ70_03195) mreBH 556976..557983 (-) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  AADZ70_RS03200 (AADZ70_03200) abrB 558254..558538 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AADZ70_RS03205 (AADZ70_03205) - 558710..560014 (+) 1305 WP_342007716.1 ATP-binding protein -
  AADZ70_RS03210 (AADZ70_03210) - 560016..560843 (+) 828 WP_099744284.1 gamma-glutamylcyclotransferase -
  AADZ70_RS03215 (AADZ70_03215) ktrC 560884..561549 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  AADZ70_RS03220 (AADZ70_03220) ade 561699..563432 (+) 1734 WP_342007717.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=979670 AADZ70_RS03200 WP_013352109.1 558254..558538(+) (abrB) [Bacillus sp. YBsi01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=979670 AADZ70_RS03200 WP_013352109.1 558254..558538(+) (abrB) [Bacillus sp. YBsi01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACTCCCGACAATCAGGAATACGGCAACGGTAAAATCATTTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment