Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AADZ70_RS00935 Genome accession   NZ_CP151679
Coordinates   169752..170330 (+) Length   192 a.a.
NCBI ID   WP_342007554.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 164752..175330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS00915 (AADZ70_00915) - 165255..166547 (-) 1293 WP_264819945.1 globin-coupled sensor protein -
  AADZ70_RS00920 (AADZ70_00920) - 166668..168191 (-) 1524 WP_342007553.1 FAD-dependent oxidoreductase -
  AADZ70_RS00925 (AADZ70_00925) - 168315..169172 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  AADZ70_RS00930 (AADZ70_00930) - 169202..169435 (-) 234 WP_016938310.1 IDEAL domain-containing protein -
  AADZ70_RS00935 (AADZ70_00935) comK 169752..170330 (+) 579 WP_342007554.1 competence protein ComK Regulator
  AADZ70_RS00940 (AADZ70_00940) - 170476..170847 (+) 372 WP_342007555.1 iron chaperone -
  AADZ70_RS00945 (AADZ70_00945) - 170936..171070 (+) 135 WP_342007556.1 hypothetical protein -
  AADZ70_RS00950 (AADZ70_00950) - 171063..171773 (-) 711 WP_342007557.1 YrpD family protein -
  AADZ70_RS00955 (AADZ70_00955) - 171969..172238 (+) 270 WP_016938305.1 excalibur calcium-binding domain-containing protein -
  AADZ70_RS00960 (AADZ70_00960) - 172271..172588 (-) 318 WP_342007558.1 YbjQ family protein -
  AADZ70_RS00965 (AADZ70_00965) - 172629..174098 (-) 1470 WP_049628227.1 sodium:solute symporter -
  AADZ70_RS00970 (AADZ70_00970) - 174095..174295 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  AADZ70_RS00975 (AADZ70_00975) - 174416..174775 (-) 360 WP_016938302.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22336.64 Da        Isoelectric Point: 8.4484

>NTDB_id=979657 AADZ70_RS00935 WP_342007554.1 169752..170330(+) (comK) [Bacillus sp. YBsi01]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKIIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNRIFLFPTLSSSRPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=979657 AADZ70_RS00935 WP_342007554.1 169752..170330(+) (comK) [Bacillus sp. YBsi01]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGATCATTGAAAAAGATTGCATTCTATATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCGCATCTTTTTATTCCCTACACTTTCTTCTTCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCATGTTAAAGATTTTCAACCGACCGCATTTGATGATACAGCGGTCACATTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCTTATCATTCTTTTGAGAATCAAGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACTAAAATGATTTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

83.333

100

0.833

Multiple sequence alignment