Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACNHKU_RS22605 Genome accession   NZ_CP182142
Coordinates   4580067..4581059 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain CUPF09     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4575067..4586059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKU_RS22580 (ACNHKU_22580) rbsD 4575191..4575610 (+) 420 WP_000715936.1 D-ribose pyranase -
  ACNHKU_RS22585 (ACNHKU_22585) rbsA 4575618..4577123 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ACNHKU_RS22590 (ACNHKU_22590) rbsC 4577128..4578093 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACNHKU_RS22595 (ACNHKU_22595) rbsB 4578118..4579008 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACNHKU_RS22600 (ACNHKU_22600) rbsK 4579134..4580063 (+) 930 WP_001300603.1 ribokinase -
  ACNHKU_RS22605 (ACNHKU_22605) cytR 4580067..4581059 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACNHKU_RS22610 (ACNHKU_22610) mdtD 4581025..4582452 (-) 1428 WP_094337295.1 multidrug transporter subunit MdtD -
  ACNHKU_RS22615 (ACNHKU_22615) yieP 4582475..4583167 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=979623 ACNHKU_RS22605 WP_000224470.1 4580067..4581059(+) (cytR) [Escherichia coli strain CUPF09]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=979623 ACNHKU_RS22605 WP_000224470.1 4580067..4581059(+) (cytR) [Escherichia coli strain CUPF09]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment