Detailed information NTG0979608

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOH37_RS21385
• Genome accession: NZ_CP151664
• Coordinates: 4405858..4406658 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola strain 2023EP-00289
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4400858..4411658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOH37_RS21350 (SOH37_21350)	gspH	4401011..4401526 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
SOH37_RS21355 (SOH37_21355)	gspI	4401523..4401888 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
SOH37_RS21360 (SOH37_21360)	gspJ	4401885..4402481 (+)	597	WP_032731630.1	type II secretion system minor pseudopilin GspJ	-
SOH37_RS21365 (SOH37_21365)	gspK	4402478..4403458 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
SOH37_RS21370 (SOH37_21370)	gspL	4403451..4404647 (+)	1197	WP_039102856.1	type II secretion system protein GspL	-
SOH37_RS21375 (SOH37_21375)	-	4404640..4405125 (+)	486	WP_012968921.1	type II secretion system protein M	-
SOH37_RS21380 (SOH37_21380)	-	4405115..4405861 (+)	747	WP_070612007.1	type II secretion system protein N	-
SOH37_RS21385 (SOH37_21385)	pilD	4405858..4406658 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
SOH37_RS21390 (SOH37_21390)	hrpB	4406705..4409134 (-)	2430	WP_032732528.1	ATP-dependent helicase HrpB	-
SOH37_RS21395 (SOH37_21395)	thpR	4409207..4409743 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
SOH37_RS21400 (SOH37_21400)	sfsA	4409743..4410459 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
SOH37_RS21405 (SOH37_21405)	dksA	4410622..4411077 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=979608 SOH37_RS21385 WP_023322076.1 4405858..4406658(+) (pilD) [Klebsiella variicola strain 2023EP-00289]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=979608 SOH37_RS21385 WP_023322076.1 4405858..4406658(+) (pilD) [Klebsiella variicola strain 2023EP-00289]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425