Detailed information NTG0979601

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNHKU_RS17340
• Genome accession: NZ_CP182142
• Coordinates: 3505551..3506543 (-)
• Length: 330 a.a.
• NCBI ID: WP_352460283.1
• Uniprot ID: -
• Organism: Escherichia coli strain CUPF09
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3500551..3511543

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNHKU_RS17315 (ACNHKU_17315)	ygbL	3500756..3501394 (+)	639	WP_001278994.1	aldolase	-
ACNHKU_RS17320 (ACNHKU_17320)	ygbM	3501399..3502175 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACNHKU_RS17325 (ACNHKU_17325)	ygbN	3502264..3503628 (+)	1365	WP_000104459.1	GntP family transporter	-
ACNHKU_RS17330 (ACNHKU_17330)	-	3503702..3504682 (+)	981	WP_000019448.1	IS5-like element ISKpn26 family transposase	-
ACNHKU_RS17335 (ACNHKU_17335)	tnpA	3504908..3505342 (-)	435	WP_038989254.1	IS200/IS605 family transposase	-
ACNHKU_RS17340 (ACNHKU_17340)	rpoS	3505551..3506543 (-)	993	WP_352460283.1	RNA polymerase sigma factor RpoS	Regulator
ACNHKU_RS17345 (ACNHKU_17345)	nlpD	3506606..3507700 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACNHKU_RS17350 (ACNHKU_17350)	pcm	3507885..3508511 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNHKU_RS17355 (ACNHKU_17355)	surE	3508505..3509266 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNHKU_RS17360 (ACNHKU_17360)	truD	3509247..3510296 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ACNHKU_RS17365 (ACNHKU_17365)	ispF	3510293..3510772 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNHKU_RS17370 (ACNHKU_17370)	ispD	3510772..3511482 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=979601 ACNHKU_RS17340 WP_352460283.1 3505551..3506543(-) (rpoS) [Escherichia coli strain CUPF09]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENAPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=979601 ACNHKU_RS17340 WP_352460283.1 3505551..3506543(-) (rpoS) [Escherichia coli strain CUPF09]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGCTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715