Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AADC60_RS21105 Genome accession   NZ_CP151651
Coordinates   4182370..4184739 (-) Length   789 a.a.
NCBI ID   WP_342025655.1    Uniprot ID   -
Organism   Cytobacillus pseudoceanisediminis strain GXU-Z9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4177370..4189739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADC60_RS21090 (AADC60_21090) dtd 4178922..4179362 (-) 441 WP_009333083.1 D-aminoacyl-tRNA deacylase -
  AADC60_RS21095 (AADC60_21095) - 4179377..4181572 (-) 2196 WP_342025654.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AADC60_RS21100 (AADC60_21100) - 4181867..4182379 (-) 513 WP_009333085.1 adenine phosphoribosyltransferase -
  AADC60_RS21105 (AADC60_21105) recJ 4182370..4184739 (-) 2370 WP_342025655.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AADC60_RS21110 (AADC60_21110) - 4184902..4185219 (-) 318 WP_019382912.1 lipopolysaccharide assembly LapA domain-containing protein -
  AADC60_RS21115 (AADC60_21115) - 4185244..4186146 (-) 903 WP_009333088.1 cation diffusion facilitator family transporter -
  AADC60_RS21120 (AADC60_21120) secDF 4186287..4188551 (-) 2265 WP_009333089.1 protein translocase subunit SecDF -
  AADC60_RS21125 (AADC60_21125) - 4188847..4189143 (-) 297 WP_009333090.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88220.55 Da        Isoelectric Point: 5.1482

>NTDB_id=979569 AADC60_RS21105 WP_342025655.1 4182370..4184739(-) (recJ) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
MLHSRTRWIVRQTQEDKVQQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPFLMTDMAKAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGHELPEAWAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPDHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIETLNKE
RQAIVNDIAAQAVKEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSDKGLAKGSARSIQGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIESVDDLRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGM
GNPKPKVMIKEANIAAMRKIGSDQTHIKVTIENDGSSLDGIGFGLGHLHEQISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPEVNTTWIFFNEEHISKFRTYAGESMVKISSEEDAEALKLDGSNIVLADMPPSKE
MLAHVFSGKKPARIYAHFYKEDSDYFSTIPTRDHFKWYFALLAKKGSVDIRRHGNDIAKHKGWSRETVDFMSQVFFELDF
VKINNGVISLNNTSIKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=979569 AADC60_RS21105 WP_342025655.1 4182370..4184739(-) (recJ) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACACAGGAGGATAAGGTGCAGCAGCTTTCAAAGGAATTGAATAT
TTCTCCACTGGCCGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTTTATTGGATAAAG
ACCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAAAAGCTGTTTCCAGAATAAAAGAAGCAATAGAAAAACAG
GAACCTATCTTAATTTTTGGTGATTATGATGCGGATGGAGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGACGTCCAATTCTACATACCGAATCGATTTACTGAAGGGTATGGACCAAATATCCCGGCTTTTGAACAAGCCG
CTGATACTGGCATACGTTTAATTATTACCGTAGATACAGGGATATCGGCTGTAAACGAAGCAAAGGCTGCAAAAGAGCTT
GGAATGGATTTGATTATTACAGATCACCATGAGCCTGGCCATGAGCTTCCTGAAGCATGGGCAATTGTGCATCCTAAGCA
TCCGGAAAGCAGATACCCATTCCGGGAACTGGCCGGTGTTGGAGTAGCATTTAAACTTGCACATGCGCTATATGGTGAAA
TGCCTGATCACCTCTTGGAAATAGCTGCAATCGGCACAATTGCCGACCTTGTTTCTTTAACGGGAGAGAACAGGCTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAGAATACAGGTTTGAAAGCCTTGTTTAAAGCGGCTGGAATTGAACT
TCCATCCATTAATGAAGAAACAATCGGCTTTACAATCGGGCCTCGCCTCAATGCAGCCGGCAGGCTTGAAAGTGCGGATC
CGGCAGTGGATTTACTTCTGACAAATGATCCTTATGAAGCACAAGCCATTGCTGAAGAAATTGAAACGTTAAATAAAGAG
AGGCAAGCTATTGTCAATGACATTGCAGCACAAGCGGTTAAAGAGGTTGAAACTAATTTTCCCATCAGTGAGAATTCAGT
AATTGTTGTAGGCAAAGAAGGCTGGAATGCCGGTGTAATTGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CAGCTATTGTTCTCAGTTATGACAGTGATAAAGGGCTGGCAAAGGGATCAGCAAGAAGTATTCAAGGTTTTGATCTGTTC
AAAAATCTTTCTGAATGCCGGGATATCCTTCCCCACTTTGGGGGCCATCCAATGGCGGCAGGAATGACCTTGTCAATTGA
ATCGGTCGATGACCTCAGGGATAGACTGAATACTCTTGCAAATGAACAGTTGACCGAGGAAGATTTTATTCCGGTAACCA
GCATTGATGGCGTCTTCCATCTAAAGGATATCAGCCTCTCTTCTATTGAAGAAATGCAGCTGCTTGCCCCATTTGGGATG
GGAAATCCAAAACCGAAAGTCATGATAAAAGAGGCCAATATTGCCGCTATGAGAAAAATCGGATCTGATCAAACTCATAT
AAAGGTCACCATCGAAAATGATGGATCTTCCCTTGATGGAATCGGCTTTGGACTCGGACATTTGCATGAGCAGATTTCAC
CATATTCCAAGCTATCGGTTATTGGCGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATCTTCCTGCAG
GATATGGCAGTGAACTCCTGGCAGCTATTTGATATCCGGAGTTTAAAGCGGCTCGAAAGGCTCCAAAGCGTCATTCCTGA
GGTAAACACTACTTGGATATTCTTTAATGAGGAACATATATCCAAATTCAGGACATATGCAGGGGAAAGTATGGTAAAAA
TATCATCTGAAGAGGATGCAGAAGCATTAAAACTAGATGGCTCAAACATCGTGCTTGCTGATATGCCACCTTCAAAGGAA
ATGCTTGCTCATGTATTCTCCGGAAAAAAACCTGCCAGAATTTATGCTCATTTTTATAAAGAGGACAGTGACTATTTCAG
CACTATTCCAACAAGAGATCATTTTAAGTGGTATTTTGCCCTGCTTGCTAAAAAAGGCTCGGTCGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAGGGATGGAGCAGGGAAACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGATTTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCAATTAAACGTGATTTAGCTGATTCGCGAACCTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.443

98.352

0.555

Multiple sequence alignment