Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AADC60_RS07775 Genome accession   NZ_CP151651
Coordinates   1482227..1484044 (+) Length   605 a.a.
NCBI ID   WP_342026007.1    Uniprot ID   -
Organism   Cytobacillus pseudoceanisediminis strain GXU-Z9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477227..1489044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADC60_RS07750 (AADC60_07750) - 1477766..1477954 (-) 189 WP_009331206.1 hypothetical protein -
  AADC60_RS07755 (AADC60_07755) - 1478203..1478778 (+) 576 WP_009331205.1 GNAT family N-acetyltransferase -
  AADC60_RS07760 (AADC60_07760) spxA 1479253..1479648 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  AADC60_RS07765 (AADC60_07765) mecA 1480064..1480726 (+) 663 WP_009331203.1 adaptor protein MecA -
  AADC60_RS07770 (AADC60_07770) - 1480915..1482105 (+) 1191 WP_342026006.1 competence protein CoiA family protein -
  AADC60_RS07775 (AADC60_07775) pepF 1482227..1484044 (+) 1818 WP_342026007.1 oligoendopeptidase F Regulator
  AADC60_RS07780 (AADC60_07780) - 1484147..1484320 (-) 174 WP_019381491.1 hypothetical protein -
  AADC60_RS07785 (AADC60_07785) - 1484622..1485497 (-) 876 WP_019381492.1 ClpXP adapter SpxH family protein -
  AADC60_RS07790 (AADC60_07790) - 1485494..1485898 (-) 405 WP_009331199.1 protozoan/cyano globin family protein -
  AADC60_RS07795 (AADC60_07795) - 1486361..1487002 (-) 642 WP_342026008.1 lytic transglycosylase domain-containing protein -
  AADC60_RS07800 (AADC60_07800) - 1487035..1487625 (-) 591 WP_009331197.1 CYTH domain-containing protein -
  AADC60_RS07805 (AADC60_07805) - 1487849..1488214 (+) 366 WP_009331196.1 hypothetical protein -
  AADC60_RS07810 (AADC60_07810) - 1488335..1488973 (+) 639 WP_009331195.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69911.45 Da        Isoelectric Point: 4.9924

>NTDB_id=979553 AADC60_RS07775 WP_342026007.1 1482227..1484044(+) (pepF) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
MANETTVKKLPARNEISPEDTWRLEDIFPSDEDWDKEYNEVQKLIPNAGKYQGRLGESAETLYEALQFQDHILSRLGKLY
TYAHMRYDQDTTNSFYQSMDDKIKNLYSEAASVLAYIVPELLAEDEAKIAGFLEEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEDVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNIKKDNFNAKIRNYESARHAALAANNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVEELHMYDLYTPLVKEVKM
EIPYKEAKDLILKGLKPLGGNYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
NNEALTADSLTKEYYELNKKYFGEEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=979553 AADC60_RS07775 WP_342026007.1 1482227..1484044(+) (pepF) [Cytobacillus pseudoceanisediminis strain GXU-Z9]
ATGGCTAATGAGACTACTGTGAAGAAACTGCCGGCAAGGAATGAGATTTCACCAGAAGATACCTGGCGTTTGGAGGATAT
TTTTCCTTCTGATGAAGATTGGGACAAGGAATATAATGAAGTGCAAAAGCTAATCCCTAATGCAGGCAAGTATCAAGGCA
GGCTTGGGGAAAGTGCTGAAACATTATATGAAGCGCTGCAGTTTCAGGATCATATACTCTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAACTCATTTTATCAGAGCATGGATGACAAAATTAAAAATTTATA
TTCAGAAGCTGCAAGTGTTCTCGCGTATATTGTTCCTGAATTGCTTGCTGAGGATGAAGCGAAGATTGCAGGTTTTTTAG
AGGAAAAAACGGAGCTGCAATTATATAAACACTCCCTTGAGGAAATTAATCTCCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTCCTTGCCCAGGCTTCCGAGGTGCTTGGGGCTTCAAGCAATACATTTGGCATGCTGAATAATGCTGATTT
GGAGTTTCCGTCCATTAAGGATGAAAATGGCGAAGATGTTGAAATTACTCATGGAAGATTCATCCGTTTTCTCGAAAGTG
ATGAGCAGCGTGTCCGTCATGATGCATTCAAAGCGGTATATGAGACTTATGGGAAGTTCCGCAATACTTTCGCAAGCACT
CTAAGCGGAAATATTAAAAAGGATAATTTCAATGCAAAGATCCGCAATTATGAATCTGCACGACATGCTGCTCTTGCTGC
GAACAATATTCCTGAAAGTGTTTACGAAAATTTAGTCAACACCATTAACGATAACCTGCACTTACTTCACCGATATGTCA
AACTCCGTAAAAAGGTTCTTGGGGTCGAGGAGCTTCATATGTATGATCTTTACACTCCTTTGGTGAAGGAAGTAAAAATG
GAAATCCCATACAAAGAAGCAAAAGATCTAATCTTAAAAGGACTGAAGCCGCTTGGTGGAAACTACTTAAATATTCTAAA
AGAGGGCTTTGAAAATCGCTGGGTAGATGTTCATGAGAATAAGGGCAAAAGAAGCGGTGCCTATTCATCGGGAACATATG
GCACAAATCCATATATACTGATGAACTGGCAGGACAATGTAAACAATCTATTTACCCTTGCTCACGAGTTTGGGCATTCT
GTTCACAGCTATTACACAAGAAAATATCAGCCATATCCATATGGAAATTATTCAATTTTTGTTGCAGAGGTTGCATCCAC
ATGTAATGAAGCCCTCTTAAATGATTATCTGCTCAAAACAATAGATGATGATAAGAAGCGTTTGTATCTTCTGAATCATT
ATCTTGAAGGCTTTAGGGGAACTGTTTTCCGCCAGACAATGTTTGCAGAGTTTGAACATCTCATCCATAAAAAGGCGCAA
AACAATGAAGCTTTAACCGCAGATTCATTGACAAAAGAATATTATGAGCTCAATAAGAAGTATTTTGGGGAAGAAGACAT
CGTTATTGATGAAGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAGTATGCAA
CAGGCTTCAGTGCGGCAACTGCATTAAGCAAGCAAATTCTTCAGGAAGGTCAGCCTGCAGTTGACAGATACATTGAATTC
CTGAAATCCGGCAGCTCAGATTATCCAATAGAGGTGCTAAAGAAAGCTGGTGTTGATATGACGAGCAGCAAGCCGATTGA
AGATGCCTGCAAAGTATTCGAGGAAAAGCTTAACGAAATGGAAAGCTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.663

98.182

0.488

Multiple sequence alignment