Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACNHKQ_RS17955 Genome accession   NZ_CP182139
Coordinates   3660887..3661879 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain CUWW06     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655887..3666879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKQ_RS17930 (ACNHKQ_17930) ygbN 3656542..3657906 (+) 1365 Protein_3491 GntP family transporter -
  ACNHKQ_RS17935 (ACNHKQ_17935) - 3657945..3658181 (-) 237 WP_000562980.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACNHKQ_RS17940 (ACNHKQ_17940) - 3658192..3659619 (-) 1428 WP_032281499.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACNHKQ_RS17945 (ACNHKQ_17945) - 3659619..3660212 (-) 594 WP_032281500.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACNHKQ_RS17950 (ACNHKQ_17950) - 3660359..3660766 (+) 408 WP_032281501.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACNHKQ_RS17955 (ACNHKQ_17955) rpoS 3660887..3661879 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACNHKQ_RS17960 (ACNHKQ_17960) nlpD 3661942..3663036 (-) 1095 WP_309460894.1 murein hydrolase activator NlpD -
  ACNHKQ_RS17965 (ACNHKQ_17965) pcm 3663221..3663847 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACNHKQ_RS17970 (ACNHKQ_17970) surE 3663841..3664602 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ACNHKQ_RS17975 (ACNHKQ_17975) truD 3664583..3665632 (-) 1050 WP_032281504.1 tRNA pseudouridine(13) synthase TruD -
  ACNHKQ_RS17980 (ACNHKQ_17980) ispF 3665629..3666108 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACNHKQ_RS17985 (ACNHKQ_17985) ispD 3666108..3666818 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=979533 ACNHKQ_RS17955 WP_000081550.1 3660887..3661879(-) (rpoS) [Escherichia coli strain CUWW06]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=979533 ACNHKQ_RS17955 WP_000081550.1 3660887..3661879(-) (rpoS) [Escherichia coli strain CUWW06]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAACTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTTGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715