Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAEO81_RS26200 Genome accession   NZ_CP151650
Coordinates   5811135..5812505 (-) Length   456 a.a.
NCBI ID   WP_166598409.1    Uniprot ID   -
Organism   Pseudomonas sp. RC10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5806135..5817505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO81_RS26180 (AAEO81_26180) yjiA 5807011..5807982 (-) 972 WP_341959880.1 GTPase -
  AAEO81_RS26185 (AAEO81_26185) - 5808122..5808319 (-) 198 WP_166598406.1 YbdD/YjiX family protein -
  AAEO81_RS26190 (AAEO81_26190) - 5808346..5810415 (-) 2070 WP_341959881.1 carbon starvation CstA family protein -
  AAEO81_RS26195 (AAEO81_26195) - 5810609..5810977 (+) 369 WP_341959882.1 PilZ domain-containing protein -
  AAEO81_RS26200 (AAEO81_26200) radA 5811135..5812505 (-) 1371 WP_166598409.1 DNA repair protein RadA Machinery gene
  AAEO81_RS26205 (AAEO81_26205) mscL 5812703..5813152 (+) 450 WP_166598411.1 large-conductance mechanosensitive channel protein MscL -
  AAEO81_RS26210 (AAEO81_26210) - 5813324..5814100 (-) 777 WP_166598412.1 ferredoxin--NADP reductase -
  AAEO81_RS26215 (AAEO81_26215) - 5814459..5814683 (+) 225 WP_256665454.1 helix-turn-helix transcriptional regulator -
  AAEO81_RS26220 (AAEO81_26220) - 5814841..5815965 (+) 1125 WP_341959884.1 methyltransferase -
  AAEO81_RS26225 (AAEO81_26225) - 5816080..5816247 (-) 168 WP_341959885.1 DUF2474 domain-containing protein -
  AAEO81_RS26230 (AAEO81_26230) cydB 5816260..5817267 (-) 1008 WP_341959886.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48593.97 Da        Isoelectric Point: 6.6131

>NTDB_id=979522 AAEO81_RS26200 WP_166598409.1 5811135..5812505(-) (radA) [Pseudomonas sp. RC10]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRGGWAGQQAQIKTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAERMPALYVTGEESQQQVAMRARRLSLPQDKLRVMTETSIETIIA
TARVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVAGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRALPGDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLTVIGVTRLDQALDALFEE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=979522 AAEO81_RS26200 WP_166598409.1 5811135..5812505(-) (radA) [Pseudomonas sp. RC10]
ATGGCCAAGGCCAAACGCATGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGGCAATGCGGCGAATG
CGGCGCCTGGAATACGCTGACCGAAACCATGATCGAAAGCGGTGGCGCAGCAGCCCCGGCAGGGCGTGGCGGTTGGGCCG
GGCAGCAGGCACAGATCAAGACCCTCGCCGAAGTCAGCGTTGAAGAGATTCCGCGTTTTTCCACCAATTCTGCCGAACTC
GACCGCGTGCTCGGCGGCGGTCTGGTGGACGGCTCAGTGGTGTTGATCGGTGGCGACCCCGGCATCGGTAAGTCGACGAT
CCTGCTGCAAACCCTCTGCGCCATCGCCGAACGCATGCCCGCGCTGTACGTCACCGGCGAGGAATCGCAACAGCAGGTCG
CCATGCGCGCCCGCCGTTTGAGCCTGCCCCAGGACAAACTGCGGGTCATGACCGAAACCTCCATCGAAACCATCATCGCC
ACGGCCCGCGTCGAACAGCCGAAGGTCATGGTGATCGATTCGATCCAGACCATCTTCACCGAGCAGCTGCAATCGGCGCC
CGGCGGCGTGGCACAGGTGCGGGAAAGCGCGGCGCTGCTGGTGCGTTACGCGAAACAGAGCGGGACGGCGATCTTTCTCG
TCGGCCACGTGACCAAAGAGGGCGCACTGGCCGGCCCTCGCGTCCTCGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCGGACGGACGTTTGCGTTTGCTACGGGCGGTGAAAAACCGTTTCGGCGCCGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGTCTGAAAGAAGTCTCGAACCCGTCGGCGATTTTTCTGACCCGTGCACAGGAAGCGGTCGCAGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACTCGCCCGATGCTGGTCGAGGTGCAGGCGCTGGTGGATGACAGTCACCTCTCT
AATCCACGTCGCGTGACGTTGGGGCTGGATCAGAACCGGCTGGCGATGCTATTGGCGGTCCTGCACCGGCATGGCGGGAT
TCCAACGCACGATCAGGACGTTTTTCTGAACGTGGTGGGCGGGGTGAAAGTGCTGGAAACGGCATCGGACCTCGCGTTAA
TGGCGGCGGTGATGTCGAGTCTTCGCAACCGGGCGTTGCCGGGAGACTTGCTGGTGTTTGGCGAAGTGGGGCTGTCGGGC
GAAGTGCGCCCTGTGCCGAGCGGCCAGGAGCGTTTAAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCCCCGAAAGAATCGCCACCGGGGCTGACCGTGATAGGCGTGACCCGGTTGGATCAGGCGTTGGATGCGTTGT
TTGAGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.491
  radA Streptococcus mitis SK321

45.714

99.781

0.456
  radA Streptococcus mitis NCTC 12261

45.495

99.781

0.454
  radA Streptococcus pneumoniae Rx1

45.495

99.781

0.454
  radA Streptococcus pneumoniae D39

45.495

99.781

0.454
  radA Streptococcus pneumoniae R6

45.495

99.781

0.454
  radA Streptococcus pneumoniae TIGR4

45.495

99.781

0.454

Multiple sequence alignment